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Transcriptional regulation of adaptive NK and CD8 T cell responses [RNA-Seq]

Alternate Titles(s): Regulation of natural killer cells during MCMV infection

UID: 10379

Author(s): Lau, Colleen M.*, Sun, Joseph C.* * MSK affiliated

Publisher(s): Memorial Sloan Kettering Cancer Center

Description
Natural killer (NK) cells are innate lymphocytes that possess features of adaptive immunity such as clonal expansion and generation of long-lived memory. Here we look at transcriptional profiles of NK cells throughout several time points during MCMV infection, ex-vivo cytokine stimulation, and/or deficiency of key transcription factors such as STAT4, STAT1, and Runx1. In addition, we profile parallel time points of MCMV-specific CD8 T cells during infection and memory formation.

Part of a SuperSeries accession comprised of:
Transcriptional and epigenetic regulation of adaptive NK cell responses [ChIP-Seq]
Transcriptional regulation of adaptive NK and CD8 T cell responses [RNA-Seq]
Epigenetic control of innate and adaptive immune memory [ATAC-Seq]
Subject of Study
Subject(s)
Access via GEO

RNA-seq performed on ex-vivo NK or CD8 T cells cultured in cytokines or NK cells harvested during in-vivo infection. Plain Text Sequencing Data.
Accession #: GSE106138

Access via SRA

RNA Sequence reads for 88 samples.
Accession #: SRP121410

Access via BioProject

Additional information about overall initiative.
Accession #: PRJNA415721

Access Restrictions
Free to All
Access Instructions
Available for download as tar SRA files from NCBI's Gene Expression Omnibus.
Associated Publications
Data Type
Equipment Used
Illumina HiSeq 2500
Dataset Format(s)
Plain Text, SRA, gzip
Dataset Size
9.9 MB (TXT), 88 datasets range from 1.7 GB to 3.4 GB (SRA)
Data Catalog Record Updated
2021-11-04