Transcriptional regulation of adaptive NK and CD8 T cell responses [RNA-Seq]
Alternate Titles(s): Regulation of natural killer cells during MCMV infection
UID: 10379
Publisher(s): Memorial Sloan Kettering Cancer Center- Description
- Natural killer (NK) cells are innate lymphocytes that possess features of adaptive immunity such as clonal expansion and generation of long-lived memory. Here we look at transcriptional profiles of NK cells throughout several time points during MCMV infection, ex-vivo cytokine stimulation, and/or deficiency of key transcription factors such as STAT4, STAT1, and Runx1. In addition, we profile parallel time points of MCMV-specific CD8 T cells during infection and memory formation.
Part of a SuperSeries accession comprised of:
Transcriptional and epigenetic regulation of adaptive NK cell responses [ChIP-Seq]
Transcriptional regulation of adaptive NK and CD8 T cell responses [RNA-Seq]
Epigenetic control of innate and adaptive immune memory [ATAC-Seq]
-
Access via GEO
RNA-seq performed on ex-vivo NK or CD8 T cells cultured in cytokines or NK cells harvested during in-vivo infection. Plain Text Sequencing Data.
Accession #: GSE106138Access via SRARNA Sequence reads for 88 samples.
Accession #: SRP121410Access via BioProjectAdditional information about overall initiative.
Accession #: PRJNA415721 - Access Restrictions
-
Free to All
- Access Instructions
- Available for download as tar SRA files from NCBI's Gene Expression Omnibus.
- Associated Publications
- Data Type
- Equipment Used
- Dataset Format(s)
- Plain Text, SRA, gzip
- Dataset Size
- 9.9 MB (TXT), 88 datasets range from 1.7 GB to 3.4 GB (SRA)
Do you have or know of a dataset that should be added to the catalog? Let us know!