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Transcriptional and epigenetic regulation of adaptive NK cell responses [ChIP-Seq]

Alternate Titles(s): Regulation of natural killer cells during MCMV infection

UID: 10381

Author(s): Lau, Colleen M.*, Sun, Joseph C.* * MSK affiliated

Publisher(s): Memorial Sloan Kettering Cancer Center

Description
Natural killer (NK) cells are innate lymphocytes that possess features of adaptive immunity such as clonal expansion and generation of long-lived memory. Interleukin (IL)-12 signaling through its downstream transcription factor STAT4 is required for the generation of memory NK cells following expansion, while type I interferon through STAT1 is important for NK cell expansion. Here, we identify gene loci that are highly enriched for STAT4 binding using ChIP-seq for STAT4 and the permissive histone mark H3K4me3 in activated NK cells. In addition, we identify gene loci that are high enriched for STAT1 binding in response to type I interferon signaling.

Part of a SuperSeries accession comprised of:
Transcriptional and epigenetic regulation of adaptive NK cell responses [ChIP-Seq]
Transcriptional regulation of adaptive NK and CD8 T cell responses [RNA-Seq]
Epigenetic control of innate and adaptive immune memory [ATAC-Seq]
Subject of Study
Subject(s)
Access via GEO

ChIP-seq performed on ex-vivo NK cells cultured in (stimulated with) IL-12/IL-18 or IFNa. BED and TAR of BIGWIG, BW Sequencing Data.
Accession #: GSE106137

Access via SRA

ChIP Sequence reads for 28 samples.
Accession #: SRP121408

Access via BioProject

Additional information about overall initiative.
Accession #: PRJNA415720

Access Restrictions
Free to All
Access Instructions
Available for download as tar SRA files from NCBI's Gene Expression Omnibus.
Associated Publications
Data Type
Equipment Used
Illumina HiSeq 2500
Dataset Format(s)
SRA, TAR, BED, BIGWIG
Dataset Size
9.4 Gb (TAR of BIGWIG, BW), 147.6 KB (BED), 78.1 GB (SRA)
Data Catalog Record Updated
2021-11-04