Transcriptional and epigenetic regulation of adaptive NK cell responses [ChIP-Seq]
Alternate Titles(s): Regulation of natural killer cells during MCMV infection
UID: 10381
Publisher(s): Memorial Sloan Kettering Cancer Center- Description
- Natural killer (NK) cells are innate lymphocytes that possess features of adaptive immunity such as clonal expansion and generation of long-lived memory. Interleukin (IL)-12 signaling through its downstream transcription factor STAT4 is required for the generation of memory NK cells following expansion, while type I interferon through STAT1 is important for NK cell expansion. Here, we identify gene loci that are highly enriched for STAT4 binding using ChIP-seq for STAT4 and the permissive histone mark H3K4me3 in activated NK cells. In addition, we identify gene loci that are high enriched for STAT1 binding in response to type I interferon signaling.
Part of a SuperSeries accession comprised of:
Transcriptional and epigenetic regulation of adaptive NK cell responses [ChIP-Seq]
Transcriptional regulation of adaptive NK and CD8 T cell responses [RNA-Seq]
Epigenetic control of innate and adaptive immune memory [ATAC-Seq]
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Access via GEO
ChIP-seq performed on ex-vivo NK cells cultured in (stimulated with) IL-12/IL-18 or IFNa. BED and TAR of BIGWIG, BW Sequencing Data.
Accession #: GSE106137Access via SRAChIP Sequence reads for 28 samples.
Accession #: SRP121408Access via BioProjectAdditional information about overall initiative.
Accession #: PRJNA415720 - Access Restrictions
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Free to All
- Access Instructions
- Available for download as tar SRA files from NCBI's Gene Expression Omnibus.
- Associated Publications
- Data Type
- Equipment Used
- Dataset Format(s)
- SRA, TAR, BED, BIGWIG
- Dataset Size
- 9.4 Gb (TAR of BIGWIG, BW), 147.6 KB (BED), 78.1 GB (SRA)
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