R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells

Default Boolean Operator: Terms in a search string will be connected by the AND operator, EXAMPLE: searching genomic melanoma will produce the same results as genomic AND melanoma .
AND, OR, NOT: Combine terms in a search with the boolean operators AND (to add specificity), OR (to broaden), or NOT (to eliminate a term). Operators must be capitalized (all other search terms are not case-sensitive).
Wild Card: Add wild card symbols * (open-ended) and ? (single character) to truncate terms. EXAMPLE: searching gen* shows results for 'gene', 'genetic', 'genomic, etc. Searching gene? returns results for 'gene' or 'genes' but not for 'genome'.
Phrase Searching: Enclose search in quotation marks "keyword or search term" to search for an exact phrase. EXAMPLE: "transcription factors" returns results for records where transcription is immediately followed by the word factors .
Diacritics: Words containing diacritics translate those characters to non-diacritic form. EXAMPLE: massague returns results for Massague&#769 .
Filter by: Located on the homepage (left panel), use filters to search for records or narrow the search. From search results page, filters can be removed by clicking on the term at the top of the page.

UID: 10387

Author(s): Prabhakaran, Sandhya*, Azizi, Elham*, Carr, Ambrose James*, Pe'er, Dana* * MSK affiliated

Description: BISCUIT (Bayesian Inference for Single-cell ClUstering and ImpuTing) provides a method for the iterative normalization and cluster of single-cell gene RNA-seq expression data. BISCUIT eases clustering of cells based on similar gene expression after correcting technical variation. The software uses a Bayesian model and employs a model driven by covariance structures for the normalization and the input of data. These functionalities are appropriate to work on tumor heterogeneity and other primary tissue to understand novel cell types.

Subject(s)

Do you have or know of a dataset that should be added to the catalog? Let us know!