GtRNAdb: Genomic tRNA Database

Default Boolean Operator: Terms in a search string will be connected by the AND operator, EXAMPLE: searching genomic melanoma will produce the same results as genomic AND melanoma .
AND, OR, NOT: Combine terms in a search with the boolean operators AND (to add specificity), OR (to broaden), or NOT (to eliminate a term). Operators must be capitalized (all other search terms are not case-sensitive).
Wild Card: Add wild card symbols * (open-ended) and ? (single character) to truncate terms. EXAMPLE: searching gen* shows results for 'gene', 'genetic', 'genomic, etc. Searching gene? returns results for 'gene' or 'genes' but not for 'genome'.
Phrase Searching: Enclose search in quotation marks "keyword or search term" to search for an exact phrase. EXAMPLE: "transcription factors" returns results for records where transcription is immediately followed by the word factors .
Diacritics: Words containing diacritics translate those characters to non-diacritic form. EXAMPLE: massague returns results for Massague&#769 .
Filter by: Located on the homepage (left panel), use filters to search for records or narrow the search. From search results page, filters can be removed by clicking on the term at the top of the page.

UID: 10390

Publisher(s): The Lowe Lab

Description: This genomic tRNA database contains tRNA gene predictions made by the program tRNAscan-SE 2.0 on complete or nearly complete genomes. Unless otherwise noted, all annotation is automated, and has not been inspected for agreement with published literature. Maintained by the Lowe Lab, Biomolecular Engineering, University of California Santa Cruz.

Subject(s)

Access via GtRNAdb
tRNAscan-SE analysis of complete genomes
Access Restrictions: Free to All
Access Instructions: Publicly accessible online database as well as a standalone unix/linux version. Search by select genome or sequence, or browse by phylogeny to view or download tRNA Gene summary information, tRNA Gene lists, tRNA Alignments, and FASTA sequences.
Associated Publications: Bacusmo J, Orsini S, Hu J, et al. The t(6)A modification acts as a positive determinant for the anticodon nuclease PrrC, and is distinctively nonessential in Streptococcus mutans. RNA Biology. 2018; 15(4-5):508-517.
Data Type: Genomic
Dataset Format(s): Plain Text, TAR, FASTA, BED

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