PATRIC: Bacterial Bioinformatics Resource Center

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UID: 10392

Description: PATRIC (Pathosystems Resource Integration Center) is the Bacterial Bioinformatics Resource Center, an information system designed to support the biomedical research community’s work on bacterial infectious diseases via integration of vital pathogen information with rich data and analysis tools. PATRIC sharpens and hones the scope of available bacterial phylogenomic data from numerous sources specifically for the bacterial research community, in order to save biologists time and effort when conducting comparative analyses. The freely available PATRIC platform provides an interface for biologists to discover data and information and conduct comprehensive comparative genomics and other analyses in a one-stop shop.

Subject(s)

Access via PATRIC
Access Restrictions: Free to All

Free to all with registration
Access Instructions: Publicly accessible online database providing search, browse, and command line interface to view rich genomic metadata (eg. phylogeny, taxanomy, AMR phenotypes, sequences, protein families, pathways, and transcriptomics). This resource also features analysis, comparison tools, and upload of private data to the PATRIC repository. Some features such as upload and annotation require free registration.
Associated Publications: Bacusmo J, Orsini S, Hu J, et al. The t(6)A modification acts as a positive determinant for the anticodon nuclease PrrC, and is distinctively nonessential in Streptococcus mutans. RNA Biology. 2018; 15(4-5):508-517.
Data Type: Genomic
Dataset Format(s): Microsoft Excel, CSV, Plain Text

Other Resources: PATRIC3 GitHub Repository
Software repository for the PATRIC project
Data Catalog Record Updated: 2024-04-19

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