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Comprehensive Genomic Characterization of Acral Melanoma

UID: 10396

From the dbGaP study description: "In this study, we performed paired tumor/normal long insert whole genome and exome sequencing and tumor RNA sequencing on primary or metastatic acral melanoma tumors collected from 34 patients. Patients were enrolled from either Vanderbilt University or the Memorial Sloan-Kettering Cancer Center. We report an integrated analysis of DNA and RNA sequencing data to describe genomic and transcriptomic characteristics of acral melanoma. The data includes information about the study, subject phenotype datasets (de-identified subject IDs, disease onset age, subject gender, and subject race), and molecular datasets (SRA run information)."
Subject of Study
OncoTree Cancer Type(s)
Acral Melanoma
Access via dbGaP

Accession #: phs001036.v1.p1

Access Restrictions
Application Required
Access Instructions
Full access to this dataset in dbGaP requires authorization through an Authorized Access Portal which can be requested for either 'data download' or 'view only'. Upon approval data can be downloaded in RNA-seq (SRA), SNV Aggregate (.MAF: mutation annotation Format), WGS and WXS formats. A full list of and information about the SRA runs, BioSamples, and experiments is publicly viewable by going to the 'Molecular Datasets' tab and clicking on 'RunSelector' at the bottom of the page. This will take you to the NCBI SRA Run Selector platform, however view and download of the datasets themselves still requires authorization through dbGaP.
Associated Publications
Data Type
Equipment Used
Illumina TruSeq RNA Access Library Prep V1.0
Illumina TruSeq RNA Library Preparation Kit V2
Dataset Format(s)
Dataset Size
1.45 TB
Other Resources
Comprehensive Genomic Characterization of Acral Melanoma BioProject

The dbGaP phs001036.v1.p1 accession is part of the NCBI BioProject PRJNA304068

Data Catalog Record Updated