Comprehensive Genomic Characterization of Acral Melanoma
UID: 10396
- Description
- From the dbGaP study description: "In this study, we performed paired tumor/normal long insert whole genome and exome sequencing and tumor RNA sequencing on primary or metastatic acral melanoma tumors collected from 34 patients. Patients were enrolled from either Vanderbilt University or the Memorial Sloan-Kettering Cancer Center. We report an integrated analysis of DNA and RNA sequencing data to describe genomic and transcriptomic characteristics of acral melanoma. The data includes information about the study, subject phenotype datasets (de-identified subject IDs, disease onset age, subject gender, and subject race), and molecular datasets (SRA run information)."
-
Access via dbGaP
Accession #: phs001036.v1.p1 - Access Restrictions
-
Application Required
- Access Instructions
- Full access to this dataset in dbGaP requires authorization through an Authorized Access Portal which can be requested for either 'data download' or 'view only'. Upon approval data can be downloaded in RNA-seq (SRA), SNV Aggregate (.MAF: mutation annotation Format), WGS and WXS formats. A full list of and information about the SRA runs, BioSamples, and experiments is publicly viewable by going to the 'Molecular Datasets' tab and clicking on 'RunSelector' at the bottom of the page. This will take you to the NCBI SRA Run Selector platform, however view and download of the datasets themselves still requires authorization through dbGaP.
- Associated Publications
- Data Type
- Equipment Used
- Dataset Format(s)
- SRA, MAF, WGS, WXS
- Dataset Size
- 1.45 TB
Do you have or know of a dataset that should be added to the catalog? Let us know!