RNA sequencing data for 30 bladder cancer cell lines

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UID: 10401

Author(s): Lee, I-Ling, McConkey, David J., Su, Xiaoping, Choi, Woonyoung

Description: Summary from the GEO: "RNA-sequencing of a panel of urothelial cancer cells. The goal of the study is to examine the genome-wide expression profile in each of the 30 urothelial cancer cells tested in our laboratory."

"Overall design: Each of the 30 cell lines was DNA fingerprinted to confirm its real identity. Total RNA was obtained from each cell line and subjected to Illumina RNA sequencing."

The data was from a study on comprehensive molecular characterization of muscle-invasive bladder cancer.

Subject of Study

Subject(s)

OncoTree Cancer Type(s)

Bladder/Urinary Tract

Access via GEO
RNA sequence data
Accession #: GSE97768
Access Restrictions: Free to All
Access Instructions: The NCBI Gene Expression Omnibus database provides open access to these files. SRA and/or tar files can be downloaded directly from the site or viewed in the NCBI SRA Run Selector (link at bottom of page).
Associated Publications: Robertson AG, Kim J, Al-Ahmadie H, et al. Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer [published correction appears in Cell. 2018 Aug 9;174(4):1033]. Cell. 2017;171(3):540-556.e25.
Data Type: Genomic
Equipment Used: Illumina HiSeq 2500
High throughput sequencing system
Dataset Format(s): SRA, TAR
Dataset Size: 1.2 MB

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