Upper Tract Urothelial Cancer (MSK, Eur Urol 2015): Next-generation sequencing (MSK-IMPACT) on all protein-coding exons of 300 cancer associated genes of 85 Upper Tract Urothelial Carcinoma tumor samples and paired normals.
UID: 10440
Publisher(s): Memorial Sloan Kettering Cancer Center- Description
- This dataset contains summary data visualizations and clinical data from a broad of 85 samples of upper tract urothelial carcinoma tumors from 83 patients. The data was gathered utilizing the MSK-IMPACT targeted sequencing test. The clinical data includes mutation count, information about mutated genes, patient demographics, disease status, Adjuvant Chemotherapy, American Joint Committee on Cancer Tumor Stage Code, CIS, Distant Recurrence, Local Recurrence, Neoadjuvant Chemotherapy, Neoplasm Disease Lymph Node Stage American Joint Committee on Cancer Code, and Neoplasm Histologic Grade. The data set also includes copy-number segment data downloadable as .seg files and viewable via the Integrative Genomics Viewer.
- Access Restrictions
-
Free to All
- Access Instructions
- This cBioPortal for Cancer Genomics dataset is publicly available for viewing in tables or, for copy-number segments, via integrated IGV application. The data is also available for download in its entirety as a tarball or as individual TSV (tab separated value) or SEG files. Some features are only available by logging in with a Google or Microsoft account. These features include storing your virtual studies and groups which allows you to access your studies and groups from any computer, and to allow cBioPortal to remember your study view charts preferences for each study (i.e. order of the charts, type of charts and visibility). Login is optional and not required to access any of the other features of cBioPortal. Downloaded SEG files (tab-delimited segmented data text files that list loci and associated numeric values) can be viewed by downloading and installing the Integrative Genomics Viewer desktop application.
- Associated Publications
- Data Type
- Software Used
- Dataset Format(s)
- TSV, TAR, SEG
- Data Tool(s)
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MSK-IMPACT
- Dataset Size
- 203 KB
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