Ampullary Carcinoma (Baylor College of Medicine, Cell Reports 2016).

UID: 10461

Publisher(s): Australian Pancreatic Cancer Genome Initiative, Baylor College of Medicine Elkins Pancreatic Center, MD Anderson Cancer Center, Technische Universität Dresden

Description: Exome sequencing analysis of 160 cancers arising in the periampullary region from 160 patients, 62 of these clearly arising from either the bile duct (n = 44) or the duodenum (n = 18) and 98 for which the epithelium of origin could not be clearly defined morphologically (AMPCA). This dataset contains summary data visualizations and clinical data from a sampling of 160 samples of ampullary adenocarcinomas from Baylor College of Medicine Elkins Pancreatic Center, Australian Pancreatic Cancer Genome Initiative, MD Anderson Cancer Center, and the Technical University of Dresden. The clinical data includes Patient ID, Sample ID, Mutation Count, Percent Intestinal, Associated Adenoma, Cllularity based on allele frequency, Data Source, Days to Last Followup, Immunohistochemistry Subtype, Morphology Other Features, Morphology Subtype, Neoplasm Histologic, Grade Note, Overall Survival (Months), Overall Survival Status, Patient's Vital Status, PB Blast Percentage, and Primary Tumor Site.

Subject of Study

Subject(s)

OncoTree Cancer Type(s)

Ampullary Carcinoma
Intestinal Ampullary Carcinoma

Access via cBioPortal
Access Restrictions: Free to All
Access Instructions: This cBioPortal for Cancer Genomics dataset is publicly available for viewing online as tables, graphs, and/or charts. The data is also available for download in its entirety as a tarball or as individual TSV (tab separated value) files. Some features are only available by logging in with a Google or Microsoft account. These feautes include storing your virtual studies and groups which allows you to access your studies and groups from any computer, and to allow cBioPortal to remember your study view charts preferences for each study (i.e. order of the charts, type of charts and visibility). Login is optional and not required to access any of the other features of cBioPortal.
Associated Publications: Gingras MC, Covington KR, Chang DK, et al. Ampullary Cancers Harbor ELF3 Tumor Suppressor Gene Mutations and Exhibit Frequent WNT Dysregulation. Cell Rep. 2016;14(4):907-919.
Data Type: Genomic
Dataset Format(s): TAR
Dataset Size: 2.9 MB

Do you have or know of a dataset that should be added to the catalog? Let us know!