Bladder Cancer: Whole-exome or targeted sequencing of 476 muscle-invasive bladder tumor/normal pairs via TCGA or MSK-IMPACT sequencing.
UID: 10554
Publisher(s): Memorial Sloan Kettering Cancer Center, The Cancer Genome Atlas (TCGA)- Description
- This dataset contains summary data visualizations and clinical data from whole-exome or targeted sequencing of 476 muscle-invasive bladder tumor/normal pairs via TCGA or MSK-IMPACT sequencing from 476 patients. The clinical data includes Mutation Count, Fraction Genome Altered, patient demographics, MSI scores, AJCC Metastasis Stage Code, AJCC Neoplasm Disease Lymph Node Stage, AJCC Neoplasm Disease Stage, AJCC Tumor Stage Code, Aneuploidy Score and Buffa Hypoxia Score. The data set also includes copy-number segment data downloadable as .seg files and viewable via the Integrative Genomics Viewer.
- Access Restrictions
-
Free to All
- Access Instructions
- This cBioPortal for Cancer Genomics dataset is publicly available for viewing in tables or, for copy-number segments, via integrated IGV application. The data is also available for download in its entirety as a TSV (tab separated value) or SEG files. Some features are only available by logging in with a Google or Microsoft account. These features include storing your virtual studies and groups which allows you to access your studies and groups from any computer, and to allow cBioPortal to remember your study view charts preferences for each study (i.e. order of the charts, type of charts and visibility). Login is optional and not required to access any of the other features of cBioPortal. Downloaded SEG files (tab-delimited segmented data text files that list loci and associated numeric values) can be viewed by downloading and installing the Integrative Genomics Viewer desktop application.
- Data Type
- Software Used
- Dataset Format(s)
- TSV, SEG
- Data Tool(s)
-
MSK-IMPACT
- Dataset Size
- 3.0 MB (SEG), 161 KG (TSV)
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