Mixed cfDNA (MSK, Nature Medicine 2019): Targeted sequencing of 248 samples from 124 patients' cfDNA/WBC and tumor/normal pairs.

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UID: 10574

Publisher(s): Memorial Sloan Kettering Cancer Center

Description: This dataset contains the summary data visualizations and clinical data of targeted sequencing of 248 samples from 124 patients' cfDNA/WBC[White Blood Cell] and tumor/normal pairs. Clinical data includes: Cancer Type, Mutation Count, Age, Tumor Type, cfDNA TMB, Collapsed fragment mean coverage, Collapsed mean coverage, ctDNA Fraction, MSI Score, Oncotree Code, cfDNA/Tumor Sample Class, Tumor Tissue Site, Tumor TMB, Uncollapsed mean coverage. The plaintext components of the dataset can be downloaded as a tar file. The clinical data can be downloaded as a tsv file.

Subject of Study

Subject(s)

OncoTree Cancer Type(s)

Breast Neoplasm, NOS
Breast
Non-Small Cell Lung Cancer
Prostate

Access via cBioPortal
Access Restrictions: Free to All
Access Instructions: This cBioPortal for Cancer Genomics dataset is publicly available for viewing in tables. The data is also available for download in its entirety as a tarball or as individual TSV (tab separated value) files. Some features are only available by logging in with a Google or Microsoft account. These features include storing your virtual studies and groups which allows you to access your studies and groups from any computer, and to allow cBioPortal to remember your study view charts preferences for each study (i.e. order of the charts, type of charts and visibility). Login is optional and not required to access any of the other features of cBioPortal.
Associated Publications: Razavi P, Li B, Brown D, et al. High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants. Nature Medicine. 2019; 25(12):1928-1937.
Data Type: Genomic
Dataset Format(s): TSV, TAR
Dataset Size: 427 KB (TAR), 53 KB (TSV)

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