Neuroendocrine prostate cancer models

Description: Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary: This SuperSeries is composed of the following SubSeries:
GSE112786: "Molecular characterization of neuroendocrine prostate cancer organoids and PDOX by RNA-seq
GSE112829: Methylation profile of neuroendocrine prostate cancer models.

Both of the SubSeries concerns information neuroendocrine prostate cancer studied in two forms.

Subject of Study

Subject(s)

OncoTree Cancer Type(s)

Prostate Adenocarcinoma
Prostate Neuroendocrine Carcinoma
Prostate

Access via GEO
TAR and RAW sequencing data.
Accession #: GSE112830

Access via SRA
PDOX and WES Sequence reads for 3 samples.
Accession #: SRP138000

Access via BioProject
Additional information about overall initiative.
Accession #: PRJNA449097
Access Restrictions: Free to All
Access Instructions: The NCBI Gene Expression Omnibus, SRA, and BioProject databases provide open access to these files.
Associated Publications: Puca L, Bareja R, Prandi D, et al. Patient derived organoids to model rare prostate cancer phenotypes. Nature Communications. 2018; 9:2404.
Data Type: Genomic
Equipment Used: Illumina HiSeq 2000
High throughput gene sequencing system

Illumina HiSeq 2500
High throughput sequencing system
Dataset Format(s): Plain Text, TAR, RAW
Dataset Size: 81 MB (TAR of TXT)