Breast Cancer (MSK, Cancer Cell 2018): Targeted Sequencing of tumor/normal sample pairs from 1918 Breast cancers.
UID: 10680
Publisher(s): Memorial Sloan Kettering Cancer Center- Description
- This dataset contains the summary data visualizations and clinical data from targeted sequencing of tumor/normal sample pairs from 1,918 Breast cancers from 1,756 patients. Clinical data includes: Cancer Type, Number of Samples Per Patient, Mutation Count, Fraction Genome Altered, Sample Type, Sex, Disease Free (Months), Disease Free Event, ER PCT Primary, ER Status of Sequenced Sample, ER Status of the Primary, HER2 FISH Ratio Primary, HER2 FISH Ratio Value of Sequenced Sample, HER2 FISH Status (Report and ASCO) of Primary, HER2 FISH Status of Sequenced Sample, HER2 IHC Score of Sequenced Sample, HER2 IHC Score Primary, HER2 IHC Status of Sequenced Sample, HER2 IHC Status Primary. The plaintext components of the dataset can be downloaded as a tar file. The clinical data can be downloaded as a tsv file. The dataset includes copy-number segment data downloadable as .seg files and viewable via the Integrative Genomics Viewer.
Invasive Breast Carcinoma
Breast Invasive Cancer, NOS
Breast
Breast Invasive Ductal Carcinoma
Breast Invasive Lobular Carcinoma
Breast Invasive Mixed Mucinous Carcinoma
Metaplastic Breast Cancer
Breast Mixed Ductal and Lobular Carcinoma
- Access Restrictions
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Free to All
- Access Instructions
- This cBioPortal for Cancer Genomics dataset is publicly available for viewing in tables or, for copy-number segments, via integrated IGV application. The data is also available for download in its entirety as a tarball or as individual TSV (tab separated value) or SEG files. Some features are only available by logging in with a Google or Microsoft account. These features include storing your virtual studies and groups which allows you to access your studies and groups from any computer, and to allow cBioPortal to remember your study view charts preferences for each study (i.e. order of the charts, type of charts and visibility). Login is optional and not required to access any of the other features of cBioPortal.
- Associated Publications
- Data Type
- Software Used
- Dataset Format(s)
- TSV, TAR, SEG
- Dataset Size
- 2.6 MB (TAR), 896 KB (TSV), 4.6 MB (SEG)
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