Pancreatic ductal adenocarcinoma and panreatic adenosquamous carcinoma sequencing

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UID: 10793

Description: Description from the BioProject: "In this study, whole genome sequencing and whole exome sequencing were performed to detect the genomic features of the pancreatic adenosquamous carcinoma."

125 samples were deposited and sequenced in this submission.

Subject of Study

Subject(s)

OncoTree Cancer Type(s)

Adenosquamous Carcinoma of the Pancreas

Access via BioProject
Information about the overall project and access to sample and experiment links
Accession #: PRJNA386668

Access via SRA
125 WXS and WGS sequencing runs
Accession #: SRP107982
Access Restrictions: Free to All
Access Instructions: The NCBI Sequence Read Archive and BioProject databases provide open access to these files.
Associated Publications: Polaski J, Udy D, Escobar-Hoyos L, et al. The origins and consequences of UPF1 variants in pancreatic adenosquamous carcinoma. eLife. 2021; 10:e62209.
Data Type: Genomic
Equipment Used: Illumina HiSeq 2500
High throughput sequencing system

Illumina HiSeq 4000
High throughput gene sequencing system

Illumina HiSeq X Ten
Set of 10 ultra-high-throughput sequencers
Software Used: SRA Toolkit
The NCBI SRA Toolkit enables reading ("dumping") of sequencing files from the SRA database and writing ("loading") files into the .sra format.
Dataset Format(s): FASTQ, SRA
Data Tool(s): WXS

WGS
Dataset Size: 2.55 TB

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