Physiologic expression of Sf3b1K700E causes impaired erythropoieses, aberrant splicing, and sensitivity to pharmacologic spliceosome modulation
UID: 10889
- Description
- Summary from GEO:
"Over 80% of patients with the refractory anemia with ring sideroblasts subtype of myelodysplastic syndrome (MDS) have mutations in Splicing Factor 3B, Subunit 1 (SF3B1). We generated a conditional knock-in mouse model of the most common SF3B1 mutation, Sf3b1K700E. Sf3b1K700E mice develop macrocytic anemia due to a terminal erythroid maturation defect, erythroid dysplasia, and long-term hematopoietic stem cell (LT-HSC) expansion. Sf3b1K700E myeloid progenitors and SF3B1-mutant MDS patient samples demonstrate aberrant 3' splice-site selection associated with increased nonsense-mediated decay. Tet2 loss cooperates with Sf3b1K700E to cause a more severe erythroid and LT-HSC phenotype. Furthermore, the spliceosome modulator, E7017, selectively kills Sf3b1K700E-expressing cells. Thus, Sf3b1K700E expression reflects the phenotype of the mutation in MDS and may be a therapeutic target in MDS."
Overall design from GEO:
"15 samples, including 6 mouse and 9 human samples with varying SF3B1 status."
-
Access via GEO
Accession #: GSE85712Access via BioProject
Accession #: PRJNA339149Access via SRA
Accession #: SRP082227 - Access Restrictions
-
Free to All
- Access Instructions
- The NCBI Gene Expression Omnibus, BioProject, and SRA databases provides open access to these files.
- Associated Publications
- Equipment Used
- Dataset Format(s)
- TAR, TXT
- Dataset Size
- 111.1 MB
Do you have or know of a dataset that should be added to the catalog? Let us know!