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GABA regulates electrical activity and tumor initiation in melanoma

UID: 10898

Author(s): Tagore, Mohita*, White, Richard Mark* * MSK affiliated

Description
Summary from GEO:

"Oncogenes can only initiate tumors in certain cellular contexts, which is referred to as oncogenic competence. In melanoma, whether cells in the microenvironment can endow such competence remains unclear. Using a combination of zebrafish transgenesis coupled with human tissues, we demonstrate that GABAergic signaling between keratinocytes and melanocytes promotes melanoma initiation by BRAFV600E. GABA is synthesized in melanoma cells, which then acts on GABA-A receptors on keratinocytes. Electron microscopy demonstrates specialized cell-cell junctions between keratinocytes and melanoma cells, and multi-electrode array analysis shows that GABA acts to inhibit electrical activity in melanoma/keratinocyte co-cultures. Genetic and pharmacologic perturbation of GABA synthesis abrogates melanoma initiation in vivo. These data suggest that GABAergic signaling across the skin microenvironment regulates the ability of oncogenes to initiate melanoma."

Overall design from GEO:

"To identify differentially expressed genes between monocultured, co-cultured and switched keratinocytes, we performed RNA-sequencing of the parental keratinocyte populations in monoculture and co-culture and the co-cultured keratinocyte populations that had undergone Cre mediated switching. Each condition was analyzed using three biological replicates for each of the three conditions (9 samples total)."
Subject of Study
Subject(s)
OncoTree Cancer Type(s)
Melanoma
Access via GEO


Accession #: GSE236806

Access via BioProject


Accession #: PRJNA992460

Access Restrictions
Free to All
Access Instructions
The NCBI Gene Expression Omnibus and BioProject databases provides open access to these files.
Associated Publications
Equipment Used
Illumina HiSeq 2500
Dataset Format(s)
TXT
Dataset Size
617.3 KB
Data Catalog Record Updated
2023-10-09