RNA-Seq of MSK-PCa series of Patient Derived Organoids and Xenografts

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UID: 10961

Author(s): Chen, Yu*, Khurana, Ekta, Carver, Brett S., Zhang, Zeda * MSK affiliated

Description: Summary from GEO:

"Transcriptome profiling analysis was performed in 22 human prostate cancer organoids, 6 patient-derived xenografts (PDXs) and 7 cell lines."

Overall design from GEO:

"Transcriptome analysis of patient derived prostate cancer organoids and xenografts

Please note that the "totalDf_rlog.csv" is a gene expression analysis of all our 33 uploaded RNA-seq data as well as publicly available RNA-seq from GEO:

LNCaP: SRR7651716; GSM3321040
VCaP: SRR7651717
22Rv1: SRR7651715; GSM3321039
C4-2: SRR7179610; GSM3145590
DU145: SRR7651718; GSM3321042
H660: SRR7651720; GSM3321044
PARCB1: SRR7651704; GSM3321028
PARCB3: SRR7651706; GSM3321030
PARCB6: SRR7651708; GSM3321032
PARCB8: SRR7651709; GSM3321033
MSKEF1 (MSKPca4): SRR7651719; GSM3321043

and the following data columns belong the samples as below:
BM110 -> MSKPCa18
BM111 -> MSKPCa19
ST262 -> MSKPCa20
ST278 -> MSKPCa22
ST280 -> MSKPCa24"

Subject of Study

Subject(s)

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