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Selective inhibition of HDAC3 targets synthetic vulnerabilities and activates immune surveillance in lymphoma

UID: 11074

Description
Summary from GEO:

"CREBBP mutations are highly recurrent in B-cell lymphomas and either inactivate its histone acetyltransferase (HAT) domain or truncate the protein. Herein, we show that these two classes of mutations yield different degrees of disruption of the epigenome, with HAT mutations being more severe and associated with inferior clinical outcome. Genes perturbed by CREBBP mutation are direct targets of the BCL6/HDAC3 onco-repressor complex. Accordingly, we show that HDAC3 selective inhibitors reverse CREBBP mutant aberrant epigenetic programming resulting in: a) growth inhibition of lymphoma cells through induction of BCL6 target genes such as CDKN1A and b) restoration of immune surveillance due to induction of BCL6-repressed IFN pathway and antigen presentation genes. By reactivating these genes, exposure to HDAC3-i restored the ability of tumor infiltrating lymphocytes to kill DLBCL cells in an MHC II and MHC I dependent manner, and synergized with PD-L1 blockade in a syngeneic model in vivo. Hence HDAC3-i represents a novel mechanism-based immune-epigenetic therapy for CREBBP mutant lymphomas."

Overall design from GEO:

"Lymphoma B cell lines transfected with CRISPR gRNAs to induce CREBBP mutation
KDAC001 is an HDAC3 inhibitor.
KDAC005 is the control compound."
Subject of Study
Subject(s)
Access via GEO


Accession #: GSE142357

Access via BioProject


Accession #: PRJNA596752

Access via SRA


Accession #: SRP238231

Access Restrictions
Free to All
Access Instructions
The NCBI Gene Expression Omnibus, BioProject, and SRA databases provide open access to these files.
Associated Publications
Equipment Used
Illumina HiSeq 4000
Dataset Format(s)
TAR, TXT
Dataset Size
22 MB
Data Catalog Record Updated
2023-12-07