Colorectal cancer proteome project for biomarke search and development of clinical test

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UID: 11081

Author(s): Tanaka, Atsushi*, Roehrl, Michael H.* * MSK affiliated

Description: Description from PRIDE:

"To find differentially expressed protein in colorectal cancer compared with normal colon tissue, we performed global proteome analysis using LC-MS."

Subject of Study

Subject(s)

Access via PRIDE

Accession #: PXD019103
Access Restrictions: Free to All
Access Instructions: All public datasets available in PRIDE Archive in the repository can be accessed via the website by FTP link, Web Service (for programmatic access), and the PRIDE Inspector stand-alone tool.
Associated Publications: Tanaka A, Wang J, Shia J, Zhou Y, Ogawa M, Hendrickson R, Klimstra D, Roehrl M. Maspin as a prognostic marker for early stage colorectal cancer with microsatellite instability. Frontiers in Oncology. 2020; 10:945.
Equipment Used: Orbitrap Fusion Lumos
Software Used: MaxQuant
A quantitative proteomics software package designed for analyzing large mass-spectrometric data sets. It is specifically aimed at high-resolution MS data.
Dataset Format(s): RAW, TXT
Dataset Size: 78 GB

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