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Dnmt3a regulates myeloproliferation and liver-specific homing and expansion of hematopoietic stem and progenitor cells (Bisulfite-Seq)

UID: 11236

Author(s): Guryanova, Olga*, Spitzer, Barbara*, Garrett-Bakelman, Francine, Levine, Ross L.* * MSK affiliated

Description
Summary from GEO:

"DNMT3A mutations are observed in myeloid malignancies, including myeloproliferative neoplasms (MPN), myelodysplastic syndromes (MDS), and acute myeloid leukemia (AML). Here we investigated the impact of conditional hematopoietic Dnmt3a loss on disease phenotype in primary mice. Dnmt3a ablation led to a lethal, fully penetrant myeloproliferative neoplasm with myelodysplasia (MDS/MPN) characterized by marked, progressive hepatomegaly that was transplantable. We detected expanded stem/progenitor populations in the liver of Dnmt3a-ablated mice. Homing studies showed that Dnmt3a-deleted bone marrow cells preferentially migrated to the liver. Hence, in addition to the established role of Dnmt3a in regulating self-renewal, Dnmt3a regulates tissue tropism and limits myeloid progenitor expansion in vivo."

Overall design from GEO:

"Dnmt3af/f mice (Nguyen et al) were crossed into hematopoietic-specific inducible Mx1-Cre deletor line; we examined transcriptomes from FACS-sorted LSK and GMP populations from Dnmt3af/f Mx1-Cre+ (KO) and Dnmt3af/f Mx1-Cre- (CTRL) animals at 12 months of age"
Subject of Study
Subject(s)
OncoTree Cancer Type(s)
Acute Myeloid Leukemia
Access via GEO


Accession #: GSE74165

Access via BioProject


Accession #: PRJNA299197

Access via SRA


Accession #: SRP064984

Access Restrictions
Free to All
Access Instructions
The NCBI Gene Expression Omnibus, BioProject, and SRA databases provide open access to these files.
Associated Publications
Equipment Used
Illumina HiSeq 2500
Dataset Format(s)
TAR, TXT
Dataset Size
170.7 MB
Data Catalog Record Updated
2024-04-17