Plasma whole genome sequencing from patients with stage IV colorectal cancer and microsatellite instability
UID: 11319
Publisher(s): European Genome-phenome Archive- Description
- Description from EGA:
"This dataset contains plasma WGS data from patients with stage IV colorectal cancer (CRC, n = 16) and healthy individuals (n = 21) used in the Pointy manuscript. Patients with CRC provided written consent and samples were collected as performed as described previously (Clinical-Trials.gov number NCT01876511; Georgiadis et al., 2019, Le et al., 2017). Plasma samples from 21 healthy control individuals were procured through BioIVT. Cell-free DNA (cfDNA) was extracted from plasma using the QIAamp Circulating Nucleic Acid Kit. Libraries were prepared with 5 to 250 ng of cfDNA using the NEBNext DNA Library Prep Kit. Libraries were sequenced on HiSeq2000/2500."
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Access via EGA
Accession #: EGAD00001008999 - Access Restrictions
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Application Required
- Access Instructions
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Studies associated with the dataset are listed and linked by accession numbers at the bottom of the page. - Associated Publications
- Equipment Used
- Dataset Format(s)
- FASTQ, gzip
- Dataset Size
- 109.9 GB
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