ChIP-seq of primary AML patients with t(3;3)/inv(3)
UID: 11328
Publisher(s): European Genome-phenome Archive- Description
- Description from EGA:
"ChIP-seq was conducted in blasts from patients with t(3;3) AML to assess differences of the GATA2 super-enhancer between the translocated allele and the non-translocated allele. The dataset includes 2x H3K27ac ChIP-seq and 1x MYB ChIP-seq.
ChIP samples were processed according to the Illumina TruSeq ChIP Sample Preparation Protocol (Illumina) or Diagenode Library V3 preparation protocol (Diagenode) and either sequenced single-end (1x 50 bp) on the HiSeq 2500 platform (Illumina) or paired-end (2x100 bp) on the Novaseq 6000 platform (Illumina). Briefly, reads were aligned to the human reference genome build hg19 with bowtie for single-end runs and bowtie2 for paired-end runs."
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Access via EGA
Accession #: EGAD00001006821 - Access Restrictions
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Application Required
- Access Instructions
- The European Genome-Phenome Archive (EGA) provides a service for the permanent archiving and distribution of personally identifiable genetic and phenotypic data resulting from biomedical research projects. Data at EGA was collected from individuals whose consent agreements authorise data release only for specific research use to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project.
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Studies associated with the dataset are listed and linked by accession numbers at the bottom of the page. - Associated Publications
- Equipment Used
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Illumina NovaSeq 6000
- Dataset Format(s)
- BAI
- Dataset Size
- 7.7 GB
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