Saiz et al. (2016) Code Repository

Default Boolean Operator: Terms in a search string will be connected by the AND operator, EXAMPLE: searching genomic melanoma will produce the same results as genomic AND melanoma .
AND, OR, NOT: Combine terms in a search with the boolean operators AND (to add specificity), OR (to broaden), or NOT (to eliminate a term). Operators must be capitalized (all other search terms are not case-sensitive).
Wild Card: Add wild card symbols * (open-ended) and ? (single character) to truncate terms. EXAMPLE: searching gen* shows results for 'gene', 'genetic', 'genomic, etc. Searching gene? returns results for 'gene' or 'genes' but not for 'genome'.
Phrase Searching: Enclose search in quotation marks "keyword or search term" to search for an exact phrase. EXAMPLE: "transcription factors" returns results for records where transcription is immediately followed by the word factors .
Diacritics: Words containing diacritics translate those characters to non-diacritic form. EXAMPLE: massague returns results for Massague&#769 .
Filter by: Located on the homepage (left panel), use filters to search for records or narrow the search. From search results page, filters can be removed by clicking on the term at the top of the page.

UID: 11376

Author(s): Arenales, Nestor Saiz* * MSK affiliated

Description: Description from GitHub:

"This repository contains the data extracted from all embryo images in the study, the R scripts used to clean, transform and analyze the data and the code to generate all plots in the article. All original microscopy images and raw image segmentation files can be found in Figshare"

Subject(s)

Access via GitHub
Access Restrictions: Free to All
Access Instructions: Available for viewing and download via GitHub
Associated Publications: Saiz N, Williams K, Seshan V, Hadjantonakis A. Asynchronous fate decisions by single cells collectively ensure consistent lineage composition in the mouse blastocyst. Nature Communications. 2016; 7:13463.
Software Used: R
a free software environment for statistical computing and graphics.
Dataset Format(s): R, CSV, MD
Dataset Size: 7.3 MB

Do you have or know of a dataset that should be added to the catalog? Let us know!