custom xpresspipe docker image for Salloum et al. A Rapid Translational Immune Response Program in CD8 Memory T Lymphocytes

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UID: 11385

Author(s): Davidson, Natalie R.* * MSK affiliated

Description: Description from Zenodo:

"A Docker image for a slightly-modified version of the xpresspipe software, version 0.6.1.

xpresspipe documentation: https://xpresspipe.readthedocs.io/en/latest/content/riboseq.html

xpresspipe github: https://github.com/XPRESSyourself/XPRESSpipe"

Meant for recreation of XPRESSpipe analysis in Salloum et al.

Subject(s)

Access via Zenodo
Access Restrictions: Free to All
Access Instructions: Available through Zenodo via a Creative Commons Attribution 4.0 International License
DOI: 10.5281/zenodo.4583882
Associated Publications: Salloum D, Singh K, Davidson N, Cao L, Kuo D, Sanghvi V, Jiang M, Lafoz M, Viale A, Ratsch G, Wendel H. A rapid translational immune response program in CD8 memory T lymphocytes. Journal of Immunology. 2022; 209(6):1189-1199.
Software Used: XPRESSpipe
An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data
Dataset Format(s): TAR, gzip
Dataset Size: 3.3 GB

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