scHLApers

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UID: 11406

Author(s): Kang, Joyce

Description: Description from Zenodo:

"Code to run the scHLApers pipeline for personalized single-cell HLA quantification"

Subject(s)

Access via GitHub

Access via Zenodo
Access Restrictions: Free to All
Access Instructions: Available for download via GitHub and Zenodo
DOI: 10.5281/zenodo.10003909
Associated Publications: Kang JB, Shen AZ, Gurajala S, et al. Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution. Nat Genet. 2023 Dec;55(12):2255-2268. doi: 10.1038/s41588-023-01586-6. Epub 2023 Nov 30. PMID: 38036787; PMCID: PMC10787945.
Software Used: R
a free software environment for statistical computing and graphics.

Samtools
Samtools is a suite of programs for interacting with high-throughput sequencing data.

STAR Aligner
Spliced Transcripts Alignment to a Reference
Dataset Format(s): R, CSV, PNG, MTX, BAM, GTF, TXT, FA, zip, MD, IPYNB, SH
Dataset Size: 8.1 MB

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