Pancreas MAGIC imputed data

UID: 11412

Description: Description from Figshare:

"scRNA-seq dataset of pancreatic development at E15.5 in mice assayed using 10x genomics. Total cell number is 2531.

This contains MAGIC (van Dijk et al., Cell 2018) imputed data for 12,987 genes which are expressed in at least 10 cells.

Please cite the original publication: https://doi.org/10.1242/dev.173849"

Subject of Study

Subject(s)

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DOI: 10.6084/m9.figshare.c.5172299.v2
Associated Publications: Lange M, Bergen V, Klein M, Setty M, Reuter B, Bakhti M, Lickert H, Ansari M, Schniering J, Schiller H, Pe’er D, Theis F. CellRank for directed single-cell fate mapping. Nature Methods. 2022; 19(2):159-170.
Equipment Used: 10X Chromium
10x Genomics' Chromium technology partitions reactions into nanoliter-scale droplets containing uniquely barcoded beads called GEMs (Gel Bead-In EMulsions). This core technology can be used to partition single cells, nuclei, or high molecular weight gDNA to prepare next generation sequencing libraries in parallel.
Software Used: MAGIC
Markov Affinity-based Graph Imputation of Cells
Dataset Format(s): CSV
Dataset Size: 628.93 MB