cgpBattenberg

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UID: 11429

Author(s): Raine, Keiran, Beal, Kathryn*, Dentro, Stefan, Chapman, Brad, Alcantara, Raul * MSK affiliated

Description: Description from GitHub:

"An installation helper, perl wrapper and the R program Battenberg which detects subclonality and copy number in matched NGS data."

Subject(s)

Access via GitHub
Access Restrictions: Free to All
Access Instructions: Download from GitHub under a GNU Affero General Public License
Associated Publications: Maciejowski J, Chatzipli A, Dananberg A, Chu K, Toufektchan E, Klimczak L, Gordenin D, Campbell P, de Lange T. APOBEC3-dependent kataegis and TREX1-driven chromothripsis during telomere crisis. Nature Genetics. 2020; 52(9):884-890.
Software Used: R
a free software environment for statistical computing and graphics.
Dataset Format(s): R, TXT, YML, MD, SH
Dataset Size: 12.9 MB

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