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Results Found: 18
  • Pancreatic Adenocarcinoma (TCGA, PanCancer Atlas)

    Description

    This dataset contains summary data visualizations and clinical data from a broad sampling of 184 pancreatic adenocarcinomas and patients. The data was gathered as part of the PanCancer Atlas initiative, which aims to answer big, overarching questions about cancer by examining the full set of tumors characterized in the robust TCGA dataset. The clinical data includes mutation count, information about...

    Subject
    Adenocarcinoma
    DNA Mutational Analysis
    Pancreatic Neoplasms
    Access Rights
    Free to All
  • SUMMIT - Neratinib Basket Study (Multi-Institute, Nature 2018): MSK-IMPACT sequencing of 86 patients with HER2- and HER3-mutant cancers

    Description

    This dataset contains summary data visualizations and clinical data from a broad sampling of HER2- and HER3-mutant tumors. The data was generated utilizing the MSK-IMPACT targeted sequencing test. The clinical data includes tumor type (based on the opensource OncoTree ontology developed at MSK), mutation count, information about mutated genes, Amplification Status, Best objective response rate, Bubble...

    Subject
    Breast Neoplasms
    Carcinoma, Hepatocellular
    Carcinoma, Non-Small-Cell Lung
    Carcinoma, Renal Cell
    Colorectal Neoplasms
    DNA Mutational Analysis
    Endometrial Neoplasms
    Esophageal Neoplasms
    Genes, erbB
    Genes, erbB-2
    Melanoma
    Ovarian Neoplasms
    Pancreatic Neoplasms
    Salivary Gland Neoplasms
    Sarcoma
    Skin Neoplasms
    Urinary Bladder Neoplasms
    Uterine Cervical Neoplasms
    Access Rights
    Free to All
  • Tumors with TRK fusions (MSK, 2019): Tumors with TRK fusions based on MSK-IMPACT targeted sequencing.

    Description

    This dataset contains summary data visualizations and clinical data from a broad sampling of tropomyosin receptor kinase (TRK) fusion tumors. The data was gathered utilizing the MSK-IMPACT targeted sequencing test. The clinical data includes tumor type (based on the opensource OncoTree ontology developed at MSK), information about mutated genes, patient demographics, and modality. The data set also...

    Subject
    DNA Mutational Analysis
    Oncogene Proteins, Fusion
    Receptor Protein-Tyrosine Kinases
    Receptor, trkA
    Receptor, trkB
    Receptor, trkC
    Access Rights
    Free to All
  • Pancreatic Adenocarcinoma (TCGA, Firehose Legacy)

    Description

    TCGA Pancreatic Adenocarcinoma. Source data from GDAC Firehose. Previously known as TCGA Provisional. This dataset contains summary data visualizations and clinical data from a broad sampling of 186 carcinomas from 185 patients. The data was gathered as part of the Broad Institute of MIT and Harvard Firehose initiative, a cancer analysis pipeline. The clinical data includes mutation count, information...

    Subject
    Adenocarcinoma
    DNA Mutational Analysis
    Pancreatic Neoplasms
    Access Rights
    Free to All
  • An epigenetic program established by gene – environment interactions initiates pancreatic carcinogenesis [Set2]

    Authors
    Alonso-Curbelo, Direna
    Lowe, Scott W.
    Description

    Summary from GEO: "Damaged tissues have increased risk of cancer development through poorly understood mechanisms. In the pancreas, tissue damage collaborates with activating mutations in the Kras oncogene to dramatically accelerate the formation of early neoplastic lesions and ultimately pancreatic cancer. By integrating genomics, single-cell chromatin assays and spatiotemporally-controlled functional...

    Subject
    Carcinogenesis
    Chromatin Immunoprecipitation Sequencing
    Doxycycline
    Epithelial Cells
    Genes, ras
    Genomics
    Interleukin-33
    Pancreatic Neoplasms
    Access Rights
    Free to All
  • An epigenetic program established by gene – environment interactions initiates pancreatic carcinogenesis [Set1]

    Authors
    Alonso-Curbelo, Direna
    Lowe, Scott W.
    Description

    Summary from GEO: "Damaged tissues have increased risk of cancer development through poorly understood mechanisms. In the pancreas, tissue damage collaborates with activating mutations in the Kras oncogene to dramatically accelerate the formation of early neoplastic lesions and ultimately pancreatic cancer. By integrating genomics, single-cell chromatin assays and spatiotemporally-controlled functional...

    Subject
    Chromatin Immunoprecipitation Sequencing
    Epithelial Cells
    Genes, ras
    Genomics
    Interleukin-33
    Pancreatic Neoplasms
    Access Rights
    Free to All
  • An epigenetic program established by gene – environment interactions initiates pancreatic carcinogenesis [ATAC-seq]

    Authors
    Alonso-Curbelo, Direna
    Lowe, Scott W.
    Description

    Summary from GEO: "Damaged tissues have increased risk of cancer development through poorly understood mechanisms. For example, in the pancreas, tissue damage collaborates with activating mutations in the Kras oncogene to dramatically accelerate the formation of early neoplastic lesions and, ultimately, pancreatic cancer. By integrating genomics, single-cell chromatin assays and spatiotemporally-controlled...

    Subject
    Carcinogenesis
    Chromatin Immunoprecipitation Sequencing
    Epithelial Cells
    Genes, ras
    Genomics
    Interleukin-33
    Pancreatic Neoplasms
    Access Rights
    Free to All
  • An epigenetic program established by gene – environment interactions initiates pancreatic carcinogenesis [scATAC-Seq]

    Authors
    Alonso-Curbelo, Direna
    Lowe, Scott W.
    Description

    Summary from GEO: "Damaged tissues have increased risk of cancer development through poorly understood mechanisms. For example, in the pancreas, tissue damage collaborates with activating mutations in the Kras oncogene to dramatically accelerate the formation of early neoplastic lesions and, ultimately, pancreatic cancer. By integrating genomics, single-cell chromatin assays and spatiotemporally-controlled...

    Subject
    Carcinogenesis
    Chromatin Immunoprecipitation Sequencing
    Epithelial Cells
    Genes, ras
    Genomics
    Interleukin-33
    Pancreatic Neoplasms
    Access Rights
    Free to All
  • An epigenetic program established by gene – environment interactions initiates pancreatic carcinogenesis [ATACSeq_shBrd4]

    Authors
    Alonso-Curbelo, Direna
    Koche, Richard Patrick
    Lowe, Scott W.
    Description

    Summary from GEO: "Damaged tissues have increased risk of cancer development through poorly understood mechanisms. In the pancreas, tissue damage collaborates with activating mutations in the Kras oncogene to dramatically accelerate the formation of early neoplastic lesions and ultimately pancreatic cancer. By integrating genomics, single-cell chromatin assays and spatiotemporally-controlled functional...

    Subject
    Carcinogenesis
    Chromatin Immunoprecipitation Sequencing
    Epithelial Cells
    Genes, ras
    Genomics
    Interleukin-33
    Pancreatic Neoplasms
    Access Rights
    Free to All
  • An epigenetic program established by gene – environment interactions initiates pancreatic carcinogenesis [ATACSeq_rIL33]

    Authors
    Alonso-Curbelo, Direna
    Koche, Richard Patrick
    Lowe, Scott W.
    Description

    Summary from GEO: "Damaged tissues have increased risk of cancer development through poorly understood mechanisms. In the pancreas, tissue damage collaborates with activating mutations in the Kras oncogene to dramatically accelerate the formation of early neoplastic lesions and ultimately pancreatic cancer. By integrating genomics, single-cell chromatin assays and spatiotemporally-controlled functional...

    Subject
    Carcinogenesis
    Chromatin Immunoprecipitation Sequencing
    Epithelial Cells
    Genes, ras
    Genomics
    Interleukin-33
    Pancreatic Neoplasms
    Access Rights
    Free to All