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Pancreatic Adenocarcinoma (TCGA, PanCancer Atlas)
- Description
This dataset contains summary data visualizations and clinical data from a broad sampling of 184 pancreatic adenocarcinomas and patients. The data was gathered as part of the PanCancer Atlas initiative, which aims to answer big, overarching questions about cancer by examining the full set of tumors characterized in the robust TCGA dataset. The clinical data includes mutation count, information about...
- Subject
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AdenocarcinomaDNA Mutational AnalysisPancreatic Neoplasms
- Access Rights
- Free to All
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SUMMIT - Neratinib Basket Study (Multi-Institute, Nature 2018): MSK-IMPACT sequencing of 86 patients with HER2- and HER3-mutant cancers
- Description
This dataset contains summary data visualizations and clinical data from a broad sampling of HER2- and HER3-mutant tumors. The data was generated utilizing the MSK-IMPACT targeted sequencing test. The clinical data includes tumor type (based on the opensource OncoTree ontology developed at MSK), mutation count, information about mutated genes, Amplification Status, Best objective response rate, Bubble...
- Subject
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Breast NeoplasmsCarcinoma, HepatocellularCarcinoma, Non-Small-Cell LungCarcinoma, Renal CellColorectal NeoplasmsDNA Mutational AnalysisEndometrial NeoplasmsEsophageal NeoplasmsGenes, erbBGenes, erbB-2MelanomaOvarian NeoplasmsPancreatic NeoplasmsSalivary Gland NeoplasmsSarcomaSkin NeoplasmsUrinary Bladder NeoplasmsUterine Cervical Neoplasms
- Access Rights
- Free to All
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Tumors with TRK fusions (MSK, 2019): Tumors with TRK fusions based on MSK-IMPACT targeted sequencing.
- Description
This dataset contains summary data visualizations and clinical data from a broad sampling of tropomyosin receptor kinase (TRK) fusion tumors. The data was gathered utilizing the MSK-IMPACT targeted sequencing test. The clinical data includes tumor type (based on the opensource OncoTree ontology developed at MSK), information about mutated genes, patient demographics, and modality. The data set also...
- Subject
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DNA Mutational AnalysisOncogene Proteins, FusionReceptor Protein-Tyrosine KinasesReceptor, trkAReceptor, trkBReceptor, trkC
- Access Rights
- Free to All
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Pancreatic Adenocarcinoma (TCGA, Firehose Legacy)
- Description
TCGA Pancreatic Adenocarcinoma. Source data from GDAC Firehose. Previously known as TCGA Provisional. This dataset contains summary data visualizations and clinical data from a broad sampling of 186 carcinomas from 185 patients. The data was gathered as part of the Broad Institute of MIT and Harvard Firehose initiative, a cancer analysis pipeline. The clinical data includes mutation count, information...
- Subject
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AdenocarcinomaDNA Mutational AnalysisPancreatic Neoplasms
- Access Rights
- Free to All
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An epigenetic program established by gene – environment interactions initiates pancreatic carcinogenesis [Set2]
- Authors
- Alonso-Curbelo, DirenaLowe, Scott W.
- Description
Summary from GEO: "Damaged tissues have increased risk of cancer development through poorly understood mechanisms. In the pancreas, tissue damage collaborates with activating mutations in the Kras oncogene to dramatically accelerate the formation of early neoplastic lesions and ultimately pancreatic cancer. By integrating genomics, single-cell chromatin assays and spatiotemporally-controlled functional...
- Subject
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CarcinogenesisChromatin Immunoprecipitation SequencingDoxycyclineEpithelial CellsGenes, rasGenomicsInterleukin-33Pancreatic Neoplasms
- Access Rights
- Free to All
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An epigenetic program established by gene – environment interactions initiates pancreatic carcinogenesis [Set1]
- Authors
- Alonso-Curbelo, DirenaLowe, Scott W.
- Description
Summary from GEO: "Damaged tissues have increased risk of cancer development through poorly understood mechanisms. In the pancreas, tissue damage collaborates with activating mutations in the Kras oncogene to dramatically accelerate the formation of early neoplastic lesions and ultimately pancreatic cancer. By integrating genomics, single-cell chromatin assays and spatiotemporally-controlled functional...
- Subject
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Chromatin Immunoprecipitation SequencingEpithelial CellsGenes, rasGenomicsInterleukin-33Pancreatic Neoplasms
- Access Rights
- Free to All
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An epigenetic program established by gene – environment interactions initiates pancreatic carcinogenesis [ATAC-seq]
- Authors
- Alonso-Curbelo, DirenaLowe, Scott W.
- Description
Summary from GEO: "Damaged tissues have increased risk of cancer development through poorly understood mechanisms. For example, in the pancreas, tissue damage collaborates with activating mutations in the Kras oncogene to dramatically accelerate the formation of early neoplastic lesions and, ultimately, pancreatic cancer. By integrating genomics, single-cell chromatin assays and spatiotemporally-controlled...
- Subject
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CarcinogenesisChromatin Immunoprecipitation SequencingEpithelial CellsGenes, rasGenomicsInterleukin-33Pancreatic Neoplasms
- Access Rights
- Free to All
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An epigenetic program established by gene – environment interactions initiates pancreatic carcinogenesis [scATAC-Seq]
- Authors
- Alonso-Curbelo, DirenaLowe, Scott W.
- Description
Summary from GEO: "Damaged tissues have increased risk of cancer development through poorly understood mechanisms. For example, in the pancreas, tissue damage collaborates with activating mutations in the Kras oncogene to dramatically accelerate the formation of early neoplastic lesions and, ultimately, pancreatic cancer. By integrating genomics, single-cell chromatin assays and spatiotemporally-controlled...
- Subject
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CarcinogenesisChromatin Immunoprecipitation SequencingEpithelial CellsGenes, rasGenomicsInterleukin-33Pancreatic Neoplasms
- Access Rights
- Free to All
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An epigenetic program established by gene – environment interactions initiates pancreatic carcinogenesis [ATACSeq_shBrd4]
- Authors
- Alonso-Curbelo, DirenaKoche, Richard PatrickLowe, Scott W.
- Description
Summary from GEO: "Damaged tissues have increased risk of cancer development through poorly understood mechanisms. In the pancreas, tissue damage collaborates with activating mutations in the Kras oncogene to dramatically accelerate the formation of early neoplastic lesions and ultimately pancreatic cancer. By integrating genomics, single-cell chromatin assays and spatiotemporally-controlled functional...
- Subject
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CarcinogenesisChromatin Immunoprecipitation SequencingEpithelial CellsGenes, rasGenomicsInterleukin-33Pancreatic Neoplasms
- Access Rights
- Free to All
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An epigenetic program established by gene – environment interactions initiates pancreatic carcinogenesis [ATACSeq_rIL33]
- Authors
- Alonso-Curbelo, DirenaKoche, Richard PatrickLowe, Scott W.
- Description
Summary from GEO: "Damaged tissues have increased risk of cancer development through poorly understood mechanisms. In the pancreas, tissue damage collaborates with activating mutations in the Kras oncogene to dramatically accelerate the formation of early neoplastic lesions and ultimately pancreatic cancer. By integrating genomics, single-cell chromatin assays and spatiotemporally-controlled functional...
- Subject
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CarcinogenesisChromatin Immunoprecipitation SequencingEpithelial CellsGenes, rasGenomicsInterleukin-33Pancreatic Neoplasms
- Access Rights
- Free to All