Description from GitHub: "To convert a VCF into a MAF, each variant must be mapped to only one of all possible gene transcripts/isoforms that it might affect. But even within a single isoform, a Missense_Mutation close enough to a Splice_Site, can be labeled as either in MAF format, but not as both. This selection of a single effect per variant, is often subjective. And that's what this project...

Description from GitHub: "An algorithm to implement Fraction and Allelic Copy number estimate from Tumor/normal Sequencing" Contains cellular fraction and copy numbers from tumor sequencing