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High-resolution analyses of associations between medications, microbiome and mortality in cancer patients
- Authors
- Nguyen, ChiVan Den Brink, Marcel R. M.Peled, Jonathan
- Description
Description from Figshare: "Supplementary data files for a study investigating the associations between medication, microbiome and mortality in cancer patients." Abstract from Figshare: "Discerning the effect of pharmacological exposures on intestinal bacterial communities in cancer patients is challenging. Here, we deconvoluted the relationship between drug exposures and changes in microbial...
- Subject
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Anti-Bacterial Agents/adverse effectsGastrointestinal MicrobiomeHematopoietic Stem Cell TransplantationMetagenomicsRNA-Seq
- Access Rights
- Free to All
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PARADIGM: PARameters Associated with DynamIcs of Gut Microbiota
- Authors
- Nguyen, ChiWaters, Nicholas
- Description
Description from GitHub: "This repository contains R scripts to reproduce the five figures in Chi et al., "High resolution analyses of associations between medications, microbiome and mortality in cancer patients". R folder contains the key script for PARADIGM algorithm. RMD folder contains the scripts to produce Figures 1-5 in the paper."
- Subject
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AlgorithmsAnti-Bacterial Agents/adverse effectsData VisualizationElectronic Data ProcessingMetagenomicsRNA-Seq