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  • High-resolution analyses of associations between medications, microbiome and mortality in cancer patients

    Authors
    Nguyen, Chi
    Van Den Brink, Marcel R. M.
    Peled, Jonathan
    Description

    Description from Figshare: "Supplementary data files for a study investigating the associations between medication, microbiome and mortality in cancer patients." Abstract from Figshare: "Discerning the effect of pharmacological exposures on intestinal bacterial communities in cancer patients is challenging. Here, we deconvoluted the relationship between drug exposures and changes in microbial...

    Subject
    Anti-Bacterial Agents/adverse effects
    Gastrointestinal Microbiome
    Hematopoietic Stem Cell Transplantation
    Metagenomics
    RNA-Seq
    Access Rights
    Free to All
  • PARADIGM: PARameters Associated with DynamIcs of Gut Microbiota

    Authors
    Nguyen, Chi
    Waters, Nicholas
    Description

    Description from GitHub: "This repository contains R scripts to reproduce the five figures in Chi et al., "High resolution analyses of associations between medications, microbiome and mortality in cancer patients". R folder contains the key script for PARADIGM algorithm. RMD folder contains the scripts to produce Figures 1-5 in the paper."

    Subject
    Algorithms
    Anti-Bacterial Agents/adverse effects
    Data Visualization
    Electronic Data Processing
    Metagenomics
    RNA-Seq