Description from GitHub: "This repository contains code and data to generate the figures presented in Setton, Hadi, Choo et al. Nature 2023. Most figures (aside from those which rely on random forest training) are found in ./notebooks/figures.ipynb. The remaining figures (Figure 5, Extended Data Figure 8, and Extended Data Figure 9) are found in ./notebooks/random_forest.ipynb. We have also made...

Description from GitHub: "Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data. BRASS analyses one or more related BAM files of paired-end sequencing to determine potential rearrangement breakpoints. There are several stages the main component being: Collect read-pairs where both ends map but NOT marked as properly-paired. Perform...