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AICDA-induced epigenetic plasticity accelerates germinal center-derived lymphomagenesis
- Authors
- Teater, MattElemento, OlivierMelnick, Ari M.
- Description
Summary from the GEO: "Epigenetic heterogeneity is emerging as a significant phenotypic feature of tumors. In diffuse large B-cell lymphomas (DLBCLs), increased cytosine methylation heterogeneity is associated with poor clinical outcome, yet the biological mechanisms driving epigenetic heterogeneity remain unclear. Activation-induced cytidine deaminase (AICDA), an enzyme that deaminates and facilitates...
- Subject
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Cytidine DeaminaseGerminal CenterLymphoma, Large B-Cell, Diffuse
- Access Rights
- Free to All
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DNA Methylation Dynamics of Germinal Center B Cells Are Mediated by AID
- Authors
- Teater, MattElemento, Olivier
- Description
Summary from the GEO: "Changes in DNA methylation are required for the formation of germinal centers (GC), but the mechanisms of such changes are poorly understood. Activation-induced cytidine deaminase (AID) has been recently implicated recently in DNA demethylation through its deaminase activity coupled with DNA repair. We investigated the epigenetic function of AID in vivo in germinal center B...
- Subject
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B-LymphocytesCytidine DeaminaseGerminal CenterSomatic Hypermutation, Immunoglobulin
- Access Rights
- Free to All
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Transcriptome-wide off-target RNA editing induced by CRISPR-guided DNA base editors [ABE-max]
- Authors
- Grunewald, JulianLareau, Caleb A.
- Description
Summary from GEO: "CRISPR-Cas base editor technology enables targeted nucleotide alterations and is being rapidly deployed for research and potential therapeutic applications. The most widely used base editors induce DNA cytosine (C) deamination with rat APOBEC1 (rAPOBEC1) enzyme, which is targeted by a linked Cas protein-guide RNA (gRNA) complex. Previous studies of cytosine base editor (CBE) specificity...
- Subject
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APOBEC-1 DeaminaseCRISPR-Cas SystemsCytidine DeaminaseCytosineGene Editing
- Access Rights
- Free to All
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Transcriptome-wide off-target RNA editing induced by CRISPR-guided DNA base editors [Modifications - validation]
- Authors
- Grunewald, JulianLareau, Caleb A.
- Description
Summary from GEO: "Base Editing has been touted the most intelligent and precise application of the CRISPR platform so far, merging the simplicity of RNA-guided nucleases with deaminases that allow for the programmable generation of single base substitutions - without introduction of double-strand breaks. Even though the two-component system has been expected to cause off-target substitutions, studies...
- Subject
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APOBEC-1 DeaminaseCRISPR-Cas SystemsCytidine DeaminaseCytosineGene Editing
- Access Rights
- Free to All
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Transcriptome-wide off-target RNA editing induced by CRISPR-guided DNA base editors [Modifications - screen]
- Authors
- Grunewald, JulianLareau, Caleb A.
- Description
Summary from GEO: "Base Editing has been touted the most intelligent and precise application of the CRISPR platform so far, merging the simplicity of RNA-guided nucleases with deaminases that allow for the programmable generation of single base substitutions - without introduction of double-strand breaks. Even though the two-component system has been expected to cause off-target substitutions, studies...
- Subject
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APOBEC-1 DeaminaseCRISPR-Cas SystemsCytidine DeaminaseCytosineGene Editing
- Access Rights
- Free to All
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Transcriptome-wide off-target RNA editing induced by CRISPR-guided DNA base editors [BaseEditors - RNA]
- Authors
- Grunewald, JulianLareau, Caleb A.
- Description
Summary from GEO: "Base Editing has been touted the most intelligent and precise application of the CRISPR platform so far, merging the simplicity of RNA-guided nucleases with deaminases that allow for the programmable generation of single base substitutions - without introduction of double-strand breaks. Even though the two-component system has been expected to cause off-target substitutions, studies...
- Subject
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APOBEC-1 DeaminaseCRISPR-Cas SystemsCytidine DeaminaseCytosineGene Editing
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Transcriptome-wide off-target RNA editing induced by CRISPR-guided DNA base editors [P2A-EGFP control]
- Authors
- Grunewald, JulianLareau, Caleb A.
- Description
Summary from GEO: "Base Editing has been touted the most intelligent and precise application of the CRISPR platform so far, merging the simplicity of RNA-guided nucleases with deaminases that allow for the programmable generation of single base substitutions - without introduction of double-strand breaks. Even though the two-component system has been expected to cause off-target substitutions, studies...
- Subject
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APOBEC-1 DeaminaseCRISPR-Cas SystemsCytidine DeaminaseCytosineGene EditingRNA-Seq
- Access Rights
- Free to All