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  • Supplemental material for Misclassification simulation extrapolation method for a Weibull accelerated failure time model

    Authors
    Sevilimedu Veeravalli, Srinivasa Vardan
    Yu, Lili
    Samawi, Hani
    Description

    This dataset carries out simulation studies to investigate the impact of misclassification simulation extrapolation method on a Weibull accelerated failure time model. The proposed method is then applied to colon cancer data obtained from the cancer registry at Memorial Sloan Kettering Cancer Center. This dataset provides the simulation results with n=1000 for section 4.2 – section 4.6 in the associated...

    Subject
    Colonic Neoplasms
    Computer Simulation
    Data Interpretation, Statistical
    Survival Analysis
    Access Rights
    Free to All
  • Evaluation of scoring functions and peptide exposure by fractionation

    Authors
    Kentsis, Alex
    Description

    Evaluation of sensitivity and accuracy of widely used scoring functions Sequest, MaxQuant, Peaks, and Byonic. Spectra from E. coli were matched to human sequences, and human spectra from K052 cells were matched to A. loki sequences to determine specificity of matching and FDR estimation. A subsampling analysis of SCX-RP fractionation was performed.

    Subject
    Algorithms
    Data Interpretation, Statistical
    Mass spectrometry
    Proteomics
    Software
    Access Rights
    Free to All
  • skitools

    Authors
    Imielinski, Marcin
    Description

    Description from GitHub: "General purpose mskilab R tools: R miscellaneous utilities for basic data manipulation, debugging, viz, lsf management, and common mskilab tasks."

    Subject
    Algorithms
    Data Analysis
    Data Interpretation, Statistical
    Access Rights
    Free to All