Description from GitHub: "GenomicRanges-based classes for representing, querying, and manipulating matrices of genomic data (ie a map of pairs of genomic coordinates to a numeric value). Applications include visualization and analysis of Hi-C contact maps, barcode overlap in 10X, microhomology heatmaps, pairwise LD, and epistasis."

Description from GitHub: "This repository contains R scripts to reproduce the five figures in Chi et al., "High resolution analyses of associations between medications, microbiome and mortality in cancer patients". R folder contains the key script for PARADIGM algorithm. RMD folder contains the scripts to produce Figures 1-5 in the paper."

A jupyter notebook detailing the workflow, including data preprocessing, of running Palantir along with a demonstration of various plots and visualizations