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Transcriptome-wide off-target RNA editing induced by CRISPR-guided DNA base editors [ABE-max]
- Authors
- Grunewald, JulianLareau, Caleb A.
- Description
Summary from GEO: "CRISPR-Cas base editor technology enables targeted nucleotide alterations and is being rapidly deployed for research and potential therapeutic applications. The most widely used base editors induce DNA cytosine (C) deamination with rat APOBEC1 (rAPOBEC1) enzyme, which is targeted by a linked Cas protein-guide RNA (gRNA) complex. Previous studies of cytosine base editor (CBE) specificity...
- Subject
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APOBEC-1 DeaminaseCRISPR-Cas SystemsCytidine DeaminaseCytosineGene Editing
- Access Rights
- Free to All
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Transcriptome-wide off-target RNA editing induced by CRISPR-guided DNA base editors [Modifications - validation]
- Authors
- Grunewald, JulianLareau, Caleb A.
- Description
Summary from GEO: "Base Editing has been touted the most intelligent and precise application of the CRISPR platform so far, merging the simplicity of RNA-guided nucleases with deaminases that allow for the programmable generation of single base substitutions - without introduction of double-strand breaks. Even though the two-component system has been expected to cause off-target substitutions, studies...
- Subject
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APOBEC-1 DeaminaseCRISPR-Cas SystemsCytidine DeaminaseCytosineGene Editing
- Access Rights
- Free to All
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Transcriptome-wide off-target RNA editing induced by CRISPR-guided DNA base editors [Modifications - screen]
- Authors
- Grunewald, JulianLareau, Caleb A.
- Description
Summary from GEO: "Base Editing has been touted the most intelligent and precise application of the CRISPR platform so far, merging the simplicity of RNA-guided nucleases with deaminases that allow for the programmable generation of single base substitutions - without introduction of double-strand breaks. Even though the two-component system has been expected to cause off-target substitutions, studies...
- Subject
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APOBEC-1 DeaminaseCRISPR-Cas SystemsCytidine DeaminaseCytosineGene Editing
- Access Rights
- Free to All
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Transcriptome-wide off-target RNA editing induced by CRISPR-guided DNA base editors [BaseEditors - RNA]
- Authors
- Grunewald, JulianLareau, Caleb A.
- Description
Summary from GEO: "Base Editing has been touted the most intelligent and precise application of the CRISPR platform so far, merging the simplicity of RNA-guided nucleases with deaminases that allow for the programmable generation of single base substitutions - without introduction of double-strand breaks. Even though the two-component system has been expected to cause off-target substitutions, studies...
- Subject
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APOBEC-1 DeaminaseCRISPR-Cas SystemsCytidine DeaminaseCytosineGene Editing
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Transcriptome-wide off-target RNA editing induced by CRISPR-guided DNA base editors [P2A-EGFP control]
- Authors
- Grunewald, JulianLareau, Caleb A.
- Description
Summary from GEO: "Base Editing has been touted the most intelligent and precise application of the CRISPR platform so far, merging the simplicity of RNA-guided nucleases with deaminases that allow for the programmable generation of single base substitutions - without introduction of double-strand breaks. Even though the two-component system has been expected to cause off-target substitutions, studies...
- Subject
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APOBEC-1 DeaminaseCRISPR-Cas SystemsCytidine DeaminaseCytosineGene EditingRNA-Seq
- Access Rights
- Free to All
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Cut&Run-seq of MUTZ3 cells to investigate changes in a translocated enhancer following CRISPR treatment
- Authors
- Delwel, Ruud
- Description
Description from EMBL-EBI: "We examined the effects of targeting the GATA2 super-enhancer on EVI1 expression in MUTZ3. To that end, we conducted genome editing with CRISPR and assessed H3K27 acetylation with Cut&Run. The protocol described by the Henikoff group was used to generate these data." Detailed sample and protocol information via EMBL-EBI.
- Subject
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CRISPR-Cas SystemsGATA1 Transcription FactorGene EditingLeukemiaSequence Analysis, DNA
- Access Rights
- Free to All