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TEMPO
- Authors
- Biederstedt, EvanXiao, GongyiBolipata, Christopher AllanJonsson, Karl Philip5 more author(s)...
- Description
Description from GitHub: "Tempo is a CMO Computational Sciences (CCS) research pipeline processing WES & WGS tumor-normal pairs using the Nextflow framework. Currently the pipeline is composed of alignment and QC, and detection of both somatic alterations and germline variants. Users can begin with inputs of either paired-end FASTQs or BAMs, and process these via the command line. For further details...
- Subject
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DNA Mutational AnalysisGerm-Line MutationMatched-Pair AnalysisSoftware
- Access Rights
- Free to All
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Whole genome sequencing of SCLC tumor/normal samples
- Description
Description from EGA: "Whole genome sequencing of SCLC tumor/normal samples" Part of the Genentech Small Cell Lung Cancer (SCLC) Screen Study, EGA accession number EGAS00001000334
- Subject
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Matched-Pair AnalysisSmall Cell Lung CarcinomaWhole Genome Sequencing
- Access Rights
- Author approval required
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Exome capture sequencing of SCLC tumor/normal pairs and cell lines
- Description
Description from EGA: "Exome capture sequencing of SCLC tumor/normal pairs and cell lines" Part of the Genentech Small Cell Lung Cancer (SCLC) Screen Study, EGA accession number EGAS00001000334
- Subject
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Exome SequencingMatched-Pair AnalysisSmall Cell Lung Carcinoma
- Access Rights
- Author approval required
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RNA sequencing of SCLC tumor/normal sample pairs and cell lines
- Description
Description from EGA: "RNA sequencing of SCLC tumor/normal sample pairs and cell lines" Part of the Genentech Small Cell Lung Cancer (SCLC) Screen Study, EGA accession number EGAS00001000334
- Subject
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Matched-Pair AnalysisRNA-SeqSequence AnalysisSmall Cell Lung Carcinoma
- Access Rights
- Author approval required
