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Results Found: 3
  • Experiment summary for ENCSR857MYS

    Authors
    Hardison, Ross C.
    Description

    Description from ENCODE: "PSU mouse E14Tg2a.4 H3K9me3 ChIP-seq of H3K9me3" Title from the GEO: "Histone ChIP-seq from E14TG2a.4 (ENCSR857MYS)" Sequencing data from Mus musculus 129 E14TG2a.4 cell lines and their isogenic replicates targeting H3K9me3 is available to download and view. The interactive tools display connections between sequenced data. Further information on the datasets can be found...

    Subject
    Chromatin Immunoprecipitation Sequencing
    Mice
    Access Rights
    Free to All
  • Highly multiplexed spatially resolved gene expression profiling of mouse organogenesis

    Authors
    Ghazanfar, Shila
    Marioni, John
    Description

    Abstract from repository: "Transcriptional and epigenetic profiling of single-cells has advanced our knowledge of the molecular bases of gastrulation and early organogenesis. However, current approaches rely on dissociating cells from tissues, thereby losing the crucial spatial context that is necessary for understanding cell and tissue interactions during development. Here, we apply an image-based...

    Subject
    Gene Expression Profiling
    Mice
    Organogenesis
    RNA, Messenger
    Single-Cell Gene Expression Analysis
    Transcriptome
    Access Rights
    Free to All
  • SpatialMouseAtlas2020

    Authors
    Ghazanfar, Shila
    Marioni, John
    Description

    Description from GitHub: "Data processing and analysis scripts for our spatial profiling of mouse embryos using seqFISH as described in 'Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis'."

    Subject
    Data Analysis
    Electronic Data Processing
    Mice
    Organogenesis
    Software
    Transcriptome
    Access Rights
    Free to All