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Mixed cfDNA (MSKCC, 2020): IMPACT sequencing of 229 cell-free DNA (cfDNA) and associated tumor samples with matched normal
- Description
This dataset contains the summary data visualizations and clinical data of IMPACT sequencing of 229 cell-free DNA (cfDNA) and associated tumor samples with matched normal from 118 patients. Clinical data includes: Cancer Type, Number of Samples Per Patient, Mutation Count, Fraction Genome Altered, Sex, Primary/Metastasis Sample Type, Collaboration Id, Gene Panel, Oncotree Code, Tumor/cfDNA Sample...
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AdenocarcinomaAdenocarcinoma of LungBreast NeoplasmsCarcinoma, Ductal, BreastCarcinoma, NeuroendocrineCarcinoma, Renal CellCarcinoma, Squamous CellCell-Free Nucleic AcidsChoriocarcinomaEndodermal Sinus TumorMelanomaNeoplasms, Germ Cell and EmbryonalNeoplasms, Squamous CellNeuroendocrine TumorsProstatic NeoplasmsSeminomaSmall Cell Lung CarcinomaUrinary Bladder Neoplasms
- Access Rights
- Free to All
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Characterizing and classifying neuroendocrine neoplasms through microRNA sequencing and data mining
- Authors
- Nanayakkara, JinaYang, XiaojingTyryshkin, KathrinWong, Justin J.M.14 more author(s)...
- Description
From Dryad entry: "Abstract Neuroendocrine neoplasms (NENs) are clinically diverse and incompletely characterized cancers that are challenging to classify. MicroRNAs (miRNAs) are small regulatory RNAs that can be used to classify cancers. Recently, a morphology-based classification framework for evaluating NENs from different anatomic sites was proposed by experts, with the requirement of improved...
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MicroRNAsNeuroendocrine TumorsSequence Analysis, RNA
- Access Rights
- Free to All
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Pretrained models for 3D segmentation of neuroendocrine tumors in PET/CT with nnU-Net
- Authors
- Santilli, AlicePanyam, PrashanthAutz, ArthurWray, Rick4 more author(s)...
- Description
Description from Zenodo: "In this repository we share models trained on a large annotated dataset of PET DOTATATE images using the nnU-Net V1 pipeline. This version of the pipeline can be found here. Given the modularity of the nnU-net framework, we make these models public with the hopes of allowing other institutions to benefit from our pre-training and to improve upon and verify the generalizability...
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Image Processing, Computer-AssistedNeuroendocrine TumorsPositron Emission Tomography Computed Tomography
- Access Rights
- Free to All