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  • Cancer associated SF3B1 hotspot mutations induce cryptic 3' splice site selection through use of a different branch point

    Authors
    Seiler, Michael
    Buonamici, Silvia
    Description

    Summary from GEO: "Recurrent mutations in the spliceosome are observed in several human cancers but their functional and therapeutic significance remain elusive. SF3B1, the most frequently mutated component of the spliceosome in cancer, is involved in the recognition of the branch point sequence (BPS) during selection of the 3’ splice site (ss) in RNA splicing. Here, we report that common and tumor-specific...

    Subject
    Mutation
    Nonsense Mediated mRNA Decay
    RNA Splicing
    Spliceosomes
    Access Rights
    Free to All
  • scVelo - RNA velocity generalized through dynamical modeling

    Authors
    Bergen, Volker
    Weiler, Philipp
    Description

    Description from GitHub: "scVelo is a scalable toolkit for RNA velocity analysis in single cells; RNA velocity enables the recovery of directed dynamic information by leveraging splicing kinetics. scVelo collects different methods for inferring RNA velocity using an expectation-maximization framework, deep generative modeling, or metabolically labeled transcripts. scVelo's key applications: -...

    Subject
    RNA Splicing
    RNA Splicing Factors
    Single-Cell Analysis
    Software
    Transcriptome
    Access Rights
    Free to All