Search Tips
of 1 Next >
Results Found: 9
  • scRNA-seq analysis of SARS-CoV-2 infected human islets

    Authors
    Chen, Shuibing
    Tang, Xuming
    Uhl, Skyler
    Description

    Summary from the GEO: "Recent clinical data has suggestedsed a bi-directional relationship between Coronavirus disease 19 (COVID-19) and diabetes. Here, we showdemonstrateed the detection of SARS-CoV-2 in pancreatic endocrine cells in autopsy samples derived fromof COVID-19 patients. Single cell RNA-seq and immunostaining confirmed that multiple types of pancreatic islet cells can be infected byare...

    Subject
    Chemokines
    COVID-19
    Eukaryotic Initiation Factor-2
    Islets of Langerhans
    Access Rights
    Free to All
  • R Script for the analysis of "SARS-CoV-2 Infection Induces Beta Cell Transdifferentiation "

    Authors
    Zhang, Tuo
    Chen, Shuibing
    Description

    Summary from GitHub: This repository contains the R scripts necessary to perform the analysis in our paper Tang, Xuming et al. “SARS-CoV-2 Infection Induces Beta Cell Transdifferentiation.” Cell Metabolism, 19 May. 2021, doi:10.1016/j.cmet.2021.05.015, as described in the supplementary methods and main text." Input data: "The single cell RNA-seq data were generated with the 10X Chromium and pre-processed...

    Subject
    Chemokines
    COVID-19
    Diabetes Mellitus
    Eukaryotic Initiation Factor-2
    Access Rights
    Free to All
  • Distinct mechanisms for TMPRSS2 expression explain organ-specific inhibition of SARS-CoV-2 infection by enzalutamide [ChIP-Seq]

    Authors
    Li, Fei
    Description

    Summary from the GEO: "The coronavirus disease 2019 (COVID-19) pandemic, caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has rapidly become a global public health threat due to the lack of effective drugs or vaccines against SARS-CoV-2. The efficacy of several repurposed drugs has been evaluated in clinical trials. Among these drugs, a second second-generation antiandrogen...

    Subject
    COVID-19
    Lung Neoplasms
    Oncogene Proteins, Fusion
    Prostatic Neoplasms
    Access Rights
    Free to All
  • Distinct mechanisms for TMPRSS2 expression explain organ-specific inhibition of SARS-CoV-2 infection by enzalutamide [ATAC-Seq]

    Authors
    Li, Fei
    Description

    Summary from the GEO: "The coronavirus disease 2019 (COVID-19) pandemic, caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has rapidly become a global public health threat due to the lack of effective drugs or vaccines against SARS-CoV-2. The efficacy of several repurposed drugs has been evaluated in clinical trials. Among these drugs, a second second-generation antiandrogen...

    Subject
    COVID-19
    Lung Neoplasms
    Oncogene Proteins, Fusion
    Prostatic Neoplasms
    Access Rights
    Free to All
  • Severe COVID-19 infection with respiratory failure (analysis I)

    Description

    Method for Data Collection to GWAS Catalog submission: "The GWAS conducted by an international consortium group involved 1980 patients with severe acute respiratory failure induced by COVID-19 at seven hospitals in Italy and Spain [7]. After quality control, the final case-control cohort included 835 patients and 1255 control participants from Italy and 775 patients and 950 control participants from...

    Subject
    ABO Blood-Group System
    Coronavirus Infections
    COVID-19
    Genome-Wide Association Study
    Respiratory Insufficiency
    Access Rights
    Free to All
  • Temporal and Spatial Heterogeneity of Host Response to SARS-CoV-2 Pulmonary Infection [GeoMx human protein]

    Authors
    Desai, Neil B.
    Neyaz, Azfar
    Szabolcs, Annamaria
    Shih, Angela R.
    27 more author(s)...
    Description

    Summary from the GEO: "The relationship of SARS-CoV-2 lung infection and severity of pulmonary disease is not fully understood. We analyzed specimens from 24 autopsies from patients who succumbed to SARS-CoV-2 infection using a combination of different RNA and protein analytical platforms to characterize inter- and intra- patient heterogeneity of pulmonary virus infection. There was a spectrum of...

    Subject
    COVID-19
    Immune Checkpoint Proteins
    Interferons
    SARS-CoV-2
    Access Rights
    Free to All
  • Temporal and Spatial Heterogeneity of Host Response to SARS-CoV-2 Pulmonary Infection [gene expression]

    Description

    Summary from the GEO: " The relationship of SARS-CoV-2 lung infection and severity of pulmonary disease is not fully understood. We analyzed specimens from 24 autopsies from patients who succumbed to SARS-CoV-2 infection using a combination of different RNA and protein analytical platforms to characterize inter- and intra- patient heterogeneity of pulmonary virus infection. There was a spectrum of...

    Subject
    COVID-19
    Immune Checkpoint Proteins
    Interferons
    SARS-CoV-2
    Access Rights
    Free to All
  • Spectrum of Viral Load and Host Response Seen in Autopsies of SARS-CoV-2 Infected Lungs

    Authors
    Desai, Neil B.
    Neyaz, Azfar
    Szabolcs, Annamaria
    Shih, Angela R.
    18 more author(s)...
    Description

    Summary from the GEO: "The relationship of SARS-CoV-2 lung infection and severity of pulmonary disease is not fully understood. We visualized viral RNA by in situ hybridization and assessed the immune infiltrate using immunohistochemistry and total RNA sequencing on five COVID-19 positive patients. Patients with high levels of viral RNA showed hyaline membranes on histology, extensive pneumocyte loss,...

    Subject
    Alveolar Epithelial Cells
    COVID-19
    Hyalin
    SARS-CoV-2
    T-Lymphocytes
    Viral Load
  • Severe COVID-19 infection with respiratory failure (analysis II)

    Description

    Method for Data Collection to GWAS Catalog submission: "The GWAS conducted by an international consortium group involved 1980 patients with severe acute respiratory failure induced by COVID-19 at seven hospitals in Italy and Spain [7]. After quality control, the final case-control cohort included 835 patients and 1255 control participants from Italy and 775 patients and 950 control participants from...

    Subject
    ABO Blood-Group System
    Coronavirus Infections
    COVID-19
    Genome-Wide Association Study
    Respiratory Insufficiency
    Access Rights
    Free to All