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Results Found: 6
  • SMYD5 regulates H4K20me3-marked heterochromatin to safeguard ES cell self-renewal and prevent spurious differentiation [ChIP-Seq]

    Authors
    Kidder, Benjamin L.
    Zhao, Keji
    Description

    Summary from the GEO:"Epigenetic regulation of chromatin states is thought to control the self-renewal and differentiation of embryonic stem (ES) cells. However, the roles of repressive histone modifications such as trimethylated histone lysine 20 (H4K20me3) in pluripotency and development are largely unknown. Here, we show that the histone lysine methyltransferase SMYD5 mediates H4K20me3 at heterochromatin...

    Subject
    Chromatin Immunoprecipitation Sequencing
    DNA Methylation
    Gene Silencing
    Histone Code
    Histone-Lysine N-Methyltransferase
    Methyltransferases
    RNA Interference
    Tumor Suppressor Proteins
    Access Rights
    Free to All
  • SMYD5 regulates H4K20me3-marked heterochromatin to safeguard ES cell self-renewal and prevent spurious differentiation [RNA-Seq]

    Authors
    Kidder, Benjamin L.
    Zhao, Keji
    Description

    Summary from the GEO: "Epigenetic regulation of chromatin states is thought to control the self-renewal and differentiation of embryonic stem (ES) cells. However, the roles of repressive histone modifications such as trimethylated histone lysine 20 (H4K20me3) in pluripotency and development are largely unknown. Here, we show that the histone lysine methyltransferase SMYD5 mediates H4K20me3 at heterochromatin...

    Subject
    Chromatin Immunoprecipitation Sequencing
    DNA Methylation
    Gene Silencing
    Histone Code
    Histone-Lysine N-Methyltransferase
    Methyltransferases
    RNA Interference
    Tumor Suppressor Proteins
    Access Rights
    Free to All
  • SMYD5 regulates H4K20me3-marked heterochromatin to safeguard ES cell self-renewal and prevent spurious differentiation

    Authors
    Kidder, Benjamin L.
    Description

    Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Summary: This SuperSeries is composed of the SubSeries GSE94033 and GSE94085. Article summary that correlates to the GEO: "Epigenetic regulation of chromatin states is thought to control the self-renewal and differentiation of embryonic stem (ES) cells. However, the roles of repressive...

    Subject
    Chromatin Immunoprecipitation Sequencing
    DNA Methylation
    Gene Silencing
    Histone Code
    Histone-Lysine N-Methyltransferase
    Methyltransferases
    RNA Interference
    Tumor Suppressor Proteins
    Access Rights
    Free to All
  • Crystal structure of bovine DNMT1 BAH1 domain in complex with H4K20me3

    Authors
    Ren, Wendan
    Song, Jikui
    Description

    This deposit in the Research Collaboratory for Structural Bioinformatics Protein Data Base (PDB) includes x-ray diffraction data used for modeling the crystal structure of bovine DNMT1 BAH1 domain in complex with H4K20me3. The main summary display for this entry includes information on the experimental data, validation, macromolecules, small molecules, version history and funding identification. Data...

    Subject
    DNA (Cytosine-5-)-Methyltransferase 1
    Histones
    Methyltransferases
    Repressor Proteins
    Access Rights
    Free to All
  • Crystal structure of bovine DNMT1 BAH1 domain in complex with H4K20me2

    Authors
    Ren, Wendan
    Song, Jikui
    Description

    This deposit in the Research Collaboratory for Structural Bioinformatics Protein Data Base (PDB) includes x-ray diffraction data used for modeling the crystal structure of bovine DNMT1 BAH1 domain in complex with H4K20me2. The main summary display for this entry includes information on the experimental data, validation, macromolecules, small molecules, version history and funding identification. Data...

    Subject
    DNA (Cytosine-5-)-Methyltransferase 1
    Histones
    Methyltransferases
    Repressor Proteins
    Access Rights
    Free to All
  • RNA-seq and Ribo-seq analysis of the effects of METTL3/14 depletion on gene expression during the interferon response in Huh7 cells

    Authors
    McFadden, Michael J.
    Mourelatos, Haralambos
    Mason, Christopher E
    Horner, Stacy M.
    Description

    Summary from the GEO: "The RNA modification N6-methyladenosine (m6A) regulates gene expression through various transcript-specific effects. The overall goal of these experiments was to determine the effects of the m6A methyltransferase complex proteins METTL3 and METTL14 on the expression of interferon stimulated genes. First, we depleted METTL3 and METTL14 in Huh7 cells using siRNAs and treated with...

    Subject
    Gene Expression
    Interferons
    Methyltransferases
    Transcription, Genetic
    Access Rights
    Free to All