Description: TCGA Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma. Source data from GDAC Firehose. Previously known as TCGA Provisional. This dataset contains summary data visualizations and clinical data from a broad sampling of 310 carcinomas from 308 patients. The data was gathered as part of the Broad Institute of MIT and Harvard Firehose initiative, a cancer analysis pipeline. The clinical data includes mutation count, information about mutated genes, patient demographics, disease status, tumor typing, Adjuvant Postoperative Pharmaceutical Therapy Administered Indicator, Adjuvant Postoperative Targeted Therapy Administered Indicator, Agent Total Dose Count, American Joint Committee on Cancer Metastasis Stage Code, American Joint Committee on Cancer Publication Version Type, American Joint Committee on Cancer Tumor Stage Code, Brachytherapy first reference point administered total dose, and Brachytherapy Type. The dataset includes Next-Generation Clustered Heat Maps (NG-CHM) viewable via an embedded NG-CHM Heat Map Viewer, provided my MD Anderson Cancer Center, which provides a graphical environment for exploration of clustered or non-clustered heat map data. The data set also includes copy-number segment data downloadable as .seg files and viewable via the Integrative Genomics Viewer.

Subject of Study

Homo sapiens

Subject(s)

Adenocarcinoma

Carcinoma, Squamous Cell

DNA Mutational Analysis

Uterine Cervical Neoplasms

OncoTree Cancer Type(s)

Cervical Adenosquamous Carcinoma
Cervical Endometrioid Carcinoma
Mucinous Carcinoma
Cervix
Cervical Squamous Cell Carcinoma
Endocervical Adenocarcinoma

Access via cBioPortal
Access Restrictions: Free to All
Access Instructions: This cBioPortal for Cancer Genomics dataset is publicly available for viewing in tables or, for copy-number segments, via integrated IGV application. The data is also available for download in its entirety as a tarball or as individual TSV (tab separated value) or SEG files. Some features are only available by logging in with a Google or Microsoft account. These features include storing your virtual studies and groups which allows you to access your studies and groups from any computer, and to allow cBioPortal to remember your study view charts preferences for each study (i.e. order of the charts, type of charts and visibility). Login is optional and not required to access any of the other features of cBioPortal. Downloaded SEG files (tab-delimited segmented data text files that list loci and associated numeric values) can be viewed by downloading and installing the Integrative Genomics Viewer desktop application.
Data Type: Genomic
Software Used: Integrative Genomics Viewer (IGV)
High-performance visualization tool for interactive exploration of large, integrated genomic datasets.

NG-CHM Heat Map Viewer
A dynamic, graphical environment for exploration of clustered or non-clustered heat map data in a web browser.

OncoTree
Open-source ontology that was developed at Memorial Sloan Kettering Cancer Center (MSK) for standardizing cancer type diagnosis from a clinical perspective by assigning each diagnosis a unique OncoTree code.
Dataset Format(s): Plain Text, TAR, SEG
Dataset Size: 90.7 MB

Data Catalog Record Updated: 2021-03-25

Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma