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H3K36 methyltransferase SETD2 regulates lymphoid and neural development [seq]

UID: 10510

Description
Summary from the GEO: "We study the role of loss of Setd2 and H3K36me3 in early B cell development through NGS methods including RNA, ChIP and ATAC Seq of sorted B cell populations of control and Setd2KO primary B cells from mice. From age-matched littermate controls and Setd2KO mouse, we sorted early proB cells (B220+CD43+CD19-Cd25-IgM-) and performed ATAC-seq, RNA-Seq, and ChIP-seq using an antibody against H3K36me3."
Subject of Study
Subject(s)
OncoTree Cancer Type(s)
Lymphoid
Access via GEO

Raw and HTSeq sequencing data
Accession #: GSE130904

Access via SRA

ChIP-Seq, RNA-Seq, ATAC-Seq reads for 28 samples
Accession #: SRP197106

Access via BioProject

Additional information about overall initiative.
Accession #: PRJNA541930

Access Restrictions
Free to All
Access Instructions
The NCBI Gene Expression Omnibus, SRA, and BioProject databases provide open access to these files.
Associated Publications
Data Type
Equipment Used
Illumina HiSeq 2000
Illumina HiSeq 2500
Dataset Format(s)
Plain Text, SRA, TAR, BIGWIG
Dataset Size
569.8 Kb (TXT), 3.0 Gb (TAR of BW), SRA broken up into files of 1-13 Gb.
Data Catalog Record Updated
2023-12-07