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Lung Adenocarcinoma (MSKCC, 2020): Targeted sequencing of 604 lung adenocarcinoma tumor/normal pairs via MSK-IMPACT

UID: 10587

Publisher(s): Memorial Sloan Kettering Cancer Center

Description
This dataset contains the summary data visualizations and clinical data from targeted sequencing of 604 lung adenocarcinoma tumors from 604 patients via MSK-IMPACT. Clinical data includes: Mutation Count, Fraction Genome Altered, Sex, Age At Surgery, Clinical Nodal Status, CT Size, Diffusion lung capacity for carbon monoxide, FEV1, FGA Facets, Overall Survival Status, Pathologic Nodal Status Pathologic Stage, Person Cigarette Smoking History Pack Year Value, Predominant Histologic Subtype. The plaintext components of the dataset can be downloaded as a tar file. The clinical data can be downloaded as a tsv file. The dataset includes copy-number segment data downloadable as .seg files and viewable via the Integrative Genomics Viewer.
Subject of Study
Subject(s)
OncoTree Cancer Type(s)
Lung
Access Restrictions
Free to All
Access Instructions
This cBioPortal for Cancer Genomics dataset is publicly available for viewing in tables or, for copy-number segments, via integrated IGV application. The data is also available for download in its entirety as a tarball or as individual TSV (tab separated value) or SEG files. Some features are only available by logging in with a Google or Microsoft account. These features include storing your virtual studies and groups which allows you to access your studies and groups from any computer, and to allow cBioPortal to remember your study view charts preferences for each study (i.e. order of the charts, type of charts and visibility). Login is optional and not required to access any of the other features of cBioPortal.
Data Type
Software Used
Integrative Genomics Viewer (IGV)
Dataset Format(s)
TSV, TAR, SEG
Data Tool(s)
MSK-IMPACT
Dataset Size
872 KB (TAR), 148 (TSV), 1.2 MB (SEG)
Data Catalog Record Updated
2021-10-14