Esophageal/Stomach Cancer (MSK, 2020): Targeted sequencing of 487 Esophageal/stomach cancer tumor-normal pairs via MSK-IMPACT
UID: 10620
Publisher(s): Memorial Sloan Kettering Cancer Center- Description
- This dataset contains the summary data visualizations and clinical data from targeted sequencing of 487 Esophageal/stomach cancer tumor-normal pairs. Clinical data includes: Cancer Type, Mutation Count, Fraction Genome Altered, Overall Survival Status, Sex, Primary/Metastasis Sample Type, Age at Sampling, Cohort, cStage Category, Fraction of Genome Altered (FACETs), Impact TMB Score, MSI Score pStage Category, Sample Type Detail, Somatic Status, Tumor Grade, Tumor Purity. The plaintext components of the dataset can be downloaded as a tar file. The clinical data can be downloaded as a tsv file. The dataset includes copy-number segment data downloadable as .seg files and viewable via the Integrative Genomics Viewer.
Esophageal Poorly Differentiated Carcinoma
Esophageal Adenocarcinoma
Adenocarcinoma of the Gastroesophageal Junction
Stomach Adenocarcinoma
Tubular Stomach Adenocarcinoma
- Access Restrictions
-
Free to All
- Access Instructions
- This cBioPortal for Cancer Genomics dataset is publicly available for viewing in tables or, for copy-number segments, via integrated IGV application. The data is also available for download in its entirety as a tarball or as individual TSV (tab separated value) or SEG files. Some features are only available by logging in with a Google or Microsoft account. These features include storing your virtual studies and groups which allows you to access your studies and groups from any computer, and to allow cBioPortal to remember your study view charts preferences for each study (i.e. order of the charts, type of charts and visibility). Login is optional and not required to access any of the other features of cBioPortal.
- Data Type
- Software Used
- Dataset Format(s)
- TSV, TAR, SEG
- Data Tool(s)
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MSK-IMPACT
- Dataset Size
- 850 KB (TAR), 100 KB (TSV), 1.4 MB (SEG)
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