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A Congenital Anemia Dissociates the Pleiotropic Functions of Master Transcription Factor GATA1 [G1E_ChIPseq]
- Authors
- Ludwig, Leif S.Lareau, Caleb A.
- Description
Summary from GEO: "Master regulators, such as the hematopoietic transcription factor GATA1, have numerous roles in lineage commitment and differentiation. While human GATA1 mutations result in several blood diseases, all characterized mutations act relatively early to impair hematopoietic differentiation. Here, we describe a distinct form of hemolytic anemia involving impaired terminal erythropoiesis...
- Subject
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Anemia, Hemolytic, CongenitalChromatin Immunoprecipitation SequencingErythropoiesisGATA1 Transcription Factor
- Access Rights
- Free to All
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A Congenital Anemia Dissociates the Pleiotropic Functions of Master Transcription Factor GATA1 [G1E_RNAseq]
- Authors
- Ludwig, Leif S.Lareau, Caleb A.Sankaran, Vijay
- Description
Summary from GEO: "Master regulators, such as the hematopoietic transcription factor GATA1, have numerous roles in lineage commitment and differentiation. While human GATA1 mutations result in several blood diseases, all characterized mutations act relatively early to impair hematopoietic differentiation. Here, we describe a distinct form of hemolytic anemia involving impaired terminal erythropoiesis...
- Subject
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Anemia, Hemolytic, CongenitalErythropoiesisGATA1 Transcription FactorSequence Analysis, RNA
- Access Rights
- Free to All
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A Congenital Anemia Dissociates the Pleiotropic Functions of Master Transcription Factor GATA1 [G1E_ATACseq]
- Authors
- Ludwig, Leif S.Lareau, Caleb A.
- Description
Summary from GEO: "Master regulators, such as the hematopoietic transcription factor GATA1, have numerous roles in lineage commitment and differentiation. While human GATA1 mutations result in several blood diseases, all characterized mutations act relatively early to impair hematopoietic differentiation. Here, we describe a distinct form of hemolytic anemia involving impaired terminal erythropoiesis...
- Subject
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Anemia, Hemolytic, CongenitalChromatin Immunoprecipitation SequencingErythropoiesisGATA1 Transcription Factor
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Physiologic expression of Sf3b1K700E causes impaired erythropoieses, aberrant splicing, and sensitivity to pharmacologic spliceosome modulation
- Authors
- Seiler, MichaelObeng, Esther A.
- Description
Summary from GEO: "Over 80% of patients with the refractory anemia with ring sideroblasts subtype of myelodysplastic syndrome (MDS) have mutations in Splicing Factor 3B, Subunit 1 (SF3B1). We generated a conditional knock-in mouse model of the most common SF3B1 mutation, Sf3b1K700E. Sf3b1K700E mice develop macrocytic anemia due to a terminal erythroid maturation defect, erythroid dysplasia, and...
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Anemia, MacrocyticAnemia, RefractoryErythropoiesisGene Expression ProfilingMyelodysplastic SyndromesSpliceosomes
- Access Rights
- Free to All
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Integrated epigenomic and transcriptomic profiling of terminal human erythropoiesis [ATAC-seq]
- Authors
- Ludwig, Leif S.Lareau, Caleb A.
- Description
Summary from GEO: "In vitro cultured CD34+ derived erythroblasts were sorted using surface markers and processed using ATAC-seq." Overall design from GEO: "Biological replicates (3 or 4 per population) were processed across 2-3 biological donors for 8 sorted populations for ATAC-seq."
- Subject
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Antigens, CD34Chromatin Immunoprecipitation SequencingErythroblastsErythropoiesis
- Access Rights
- Free to All
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Integrated epigenomic and transcriptomic profiling of terminal human erythropoiesis [RNA-seq]
- Authors
- Ludwig, Leif S.Lareau, Caleb A.
- Description
Summary from GEO: "In vitro cultured CD34+ derived erythroblasts were sorted using surface markers and processed using RNA-seq." Overall design "Biological replicates (3 or 4 per population) were processed across 2-3 biological donors for 8 sorted populations for RNA-seq."
- Subject
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Antigens, CD34ErythroblastsErythropoiesisRNA-Seq
- Access Rights
- Free to All
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A Cdx4-Sall4 regulatory module controls the transition from mesoderm formation to embryonic hematopoiesis
- Authors
- Paik, Elizabeth J.Mahony, ShaunWhite, Richard MarkPrice, Emily N.6 more author(s)...
- Description
Description from Harvard Dataverse: "Deletion of caudal/cdx genes alters hox gene expression and causes defects in posterior tissues and hematopoiesis. Yet, the defects in hox gene expression only partially explain these phenotypes. To gain deeper insight into Cdx4 function, we performed ChIP-seq combined with gene expression profiling in zebrafish, and identified the transcription factor spalt-like...
- Subject
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Chromatin Immunoprecipitation SequencingErythropoiesisGene Expression ProfilingGene Knockdown TechniquesHematopoiesis
- Access Rights
- Free to All