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RNA-seq and Ribo-seq analysis of the effects of METTL3/14 depletion on gene expression during the interferon response in Huh7 cells
- Authors
- McFadden, Michael J.Mourelatos, HaralambosMason, Christopher EHorner, Stacy M.
- Description
Summary from the GEO: "The RNA modification N6-methyladenosine (m6A) regulates gene expression through various transcript-specific effects. The overall goal of these experiments was to determine the effects of the m6A methyltransferase complex proteins METTL3 and METTL14 on the expression of interferon stimulated genes. First, we depleted METTL3 and METTL14 in Huh7 cells using siRNAs and treated with...
- Subject
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Gene ExpressionInterferonsMethyltransferasesTranscription, Genetic
- Access Rights
- Free to All
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MeRIP-seq mapping of m6A in the IFN-β induced transcriptome in Huh7 cells
- Authors
- McFadden, Michael J.McIntyre, Alexa B RGokhale, Nandan S.Mason, Christopher E1 more author(s)...
- Description
Summary from the GEO: "The RNA modification N6-methyladenosine (m6A) regulates gene expression through various transcript-specific effects. The goal of this experiment was to identify m6A-modified transcripts during the type I interferon response, with interest in determining which interferon-stimulated genes are modified by m6A. We found that a high percentage of ISGs are m6A-modified, and in follow-up...
- Subject
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Gene ExpressionInterferon Type IInterferonsTranscription Factors
- Access Rights
- Free to All
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Temporal and Spatial Heterogeneity of Host Response to SARS-CoV-2 Pulmonary Infection [GeoMx human protein]
- Authors
- Desai, Neil B.Neyaz, AzfarSzabolcs, AnnamariaShih, Angela R.27 more author(s)...
- Description
Summary from the GEO: "The relationship of SARS-CoV-2 lung infection and severity of pulmonary disease is not fully understood. We analyzed specimens from 24 autopsies from patients who succumbed to SARS-CoV-2 infection using a combination of different RNA and protein analytical platforms to characterize inter- and intra- patient heterogeneity of pulmonary virus infection. There was a spectrum of...
- Subject
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COVID-19Immune Checkpoint ProteinsInterferonsSARS-CoV-2
- Access Rights
- Free to All
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Temporal and Spatial Heterogeneity of Host Response to SARS-CoV-2 Pulmonary Infection [gene expression]
- Description
Summary from the GEO: " The relationship of SARS-CoV-2 lung infection and severity of pulmonary disease is not fully understood. We analyzed specimens from 24 autopsies from patients who succumbed to SARS-CoV-2 infection using a combination of different RNA and protein analytical platforms to characterize inter- and intra- patient heterogeneity of pulmonary virus infection. There was a spectrum of...
- Subject
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COVID-19Immune Checkpoint ProteinsInterferonsSARS-CoV-2
- Access Rights
- Free to All