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  • Bulk RNA-seq of fin and body melanocytes and microenvironments

    Authors
    Weiss, Joshua M.
    Hunter, Miranda V.
    Ma, Yilun
    White, Richard Mark
    Description

    Summary from GEO: "Broadly we were interested in understanding how fin and body melanocytes were different. The goal of the experiment was to investigate the interaction between three different variables: (1) cell lineage: melanocyte vs bulk microenvironment, (2) anatomic location: fin vs body, (3) genotype: wildtype vs CRKL,GAB2,TERT overexpression with NF1 loss. We found that melanocytes have unique...

    Subject
    Gene Expression
    Melanocytes
    Melanoma/pathology
    RNA-Seq
    Skin Neoplasms
    Access Rights
    Free to All
  • Anatomic position determines oncogenic specificity in melanoma

    Authors
    Shliaha, Pavel
    Hendrickson, Ronald C.
    Description

    Oncogenic alterations to DNA are not transforming in all cellular contexts. This may be due to pre-existing transcriptional programs in the cell of origin. Here, we define anatomic position as a major determinant of why cells respond to specific oncogenes. Cutaneous melanoma arises throughout the body, whereas the acral subtype arises on the palms of the hands, soles of the feet, or under the nails....

    Subject
    Genes, Homeobox
    Melanocytes
    Melanoma, Cutaneous Malignant
    Sequence Analysis, DNA
    Sequence Analysis, RNA
    Access Rights
    Free to All
  • Lipid droplets are a metabolic vulnerability in melanoma

    Authors
    Lumaquin-Yin, Dianne
    White, Richard Mark
    Description

    Summary from GEO: "Melanoma exhibits numerous transcriptional cell states including neural crest-like cells as well as pigmented melanocytic cells. How these different cell states relate to distinct tumorigenic phenotypes remains unclear. Here, we use a zebrafish melanoma model to identify a transcriptional program linking the melanocytic cell state to a dependence on lipid droplets, the specialized...

    Subject
    Fatty Acids/metabolism
    Lipid Droplets
    Lipid Droplets/metabolism
    Melanocytes
    Melanoma
    RNA-Seq
    Access Rights
    Free to All