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Bulk RNA-seq of fin and body melanocytes and microenvironments
- Authors
- Weiss, Joshua M.Hunter, Miranda V.Ma, YilunWhite, Richard Mark
- Description
Summary from GEO: "Broadly we were interested in understanding how fin and body melanocytes were different. The goal of the experiment was to investigate the interaction between three different variables: (1) cell lineage: melanocyte vs bulk microenvironment, (2) anatomic location: fin vs body, (3) genotype: wildtype vs CRKL,GAB2,TERT overexpression with NF1 loss. We found that melanocytes have unique...
- Subject
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Gene ExpressionMelanocytesMelanoma/pathologyRNA-SeqSkin Neoplasms
- Access Rights
- Free to All
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Anatomic position determines oncogenic specificity in melanoma
- Authors
- Shliaha, PavelHendrickson, Ronald C.
- Description
Oncogenic alterations to DNA are not transforming in all cellular contexts. This may be due to pre-existing transcriptional programs in the cell of origin. Here, we define anatomic position as a major determinant of why cells respond to specific oncogenes. Cutaneous melanoma arises throughout the body, whereas the acral subtype arises on the palms of the hands, soles of the feet, or under the nails....
- Subject
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Genes, HomeoboxMelanocytesMelanoma, Cutaneous MalignantSequence Analysis, DNASequence Analysis, RNA
- Access Rights
- Free to All
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Lipid droplets are a metabolic vulnerability in melanoma
- Authors
- Lumaquin-Yin, DianneWhite, Richard Mark
- Description
Summary from GEO: "Melanoma exhibits numerous transcriptional cell states including neural crest-like cells as well as pigmented melanocytic cells. How these different cell states relate to distinct tumorigenic phenotypes remains unclear. Here, we use a zebrafish melanoma model to identify a transcriptional program linking the melanocytic cell state to a dependence on lipid droplets, the specialized...
- Subject
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Fatty Acids/metabolismLipid DropletsLipid Droplets/metabolismMelanocytesMelanomaRNA-Seq
- Access Rights
- Free to All