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Results Found: 6
  • Data from: Reflectance confocal microscopy features of BRAF V600E mutated thin melanomas detected by immunohistochemistry

    Authors
    Urvanegia, Ana Claudia
    Tavoloni Braga, Juliana Casagrande
    Shitara, Danielle
    Fregnani, Jose Humberto
    5 more author(s)...
    Description

    From Dryad summary: "Abstract: The classification of melanoma into four histological subtypes has been questioned regarding its clinical validity in providing relevant information for treatment for metastatic tumors. Specific genetic alterations are associated with particular clinical and histopathological features, suggesting that these could be helpful in refining existing melanoma classification...

    Subject
    Biomarkers, Tumor
    Melanoma
    Melanoma/genetics
    Microscopy, Confocal
    Proto-Oncogene Proteins B-raf
    Access Rights
    Free to All
  • Live visualization of ERK activity in the mouse blastocyst reveals lineage specific signaling dynamics

    Authors
    Simon, Claire S.
    Description

    Description from Figshare: "Confocal time-lapse images of hemizygous HprtERK-KTR and homozygous R26NLS-mKate2 embryos during pre-implantation development."

    Subject
    MAP Kinase Signaling System
    Microscopy, Confocal
    Time-Lapse Imaging
    Access Rights
    Free to All
  • Data and code for Simon et al (2020) Developmental Cell

    Authors
    Hadjantonakis, Anna-Katerina
    Simon, Claire S.
    Description

    Description from GitHub: "Included in this repository are: 1. CellProfiler pipelines for the segmentation and measurement of cytoplasmic and nuclear fluorescence intensities of ERK-KTR-mClover in confocal time-lapse images of hemizygousÊHprtERK-KTRÊand homozygousÊR26NLS-mKate2Êembryos during pre-implantation development. Pipeline A was used by default and Pipeline B and C were used for cells where...

    Subject
    Algorithms
    Cytoplasm
    Microscopy, Confocal
    Software
    Time-Lapse Imaging
    Access Rights
    Free to All
  • Asynchronous fate decisions at the single cell level collectively ensure a consistent lineage composition in the mouse blastocyst

    Authors
    Arenales, Nestor Saiz
    Williams, Kiah M.
    Seshan, Venkatraman
    Hadjantonakis, Anna-Katerina
    Description

    Description from Figshare: "This collection contains all raw confocal images (as .lsm Z-stacks) with their corresponding image segmentation files (as .tiff sequences), as well as the raw quantification spreadsheets (as .csv) and their corresponding corrected quantification files (as .csv) for the paper by Saiz et al (2016) Asynchronous fate decisions at the single cell level collectively ensure...

    Subject
    Algorithms
    Blastocyst
    Cell Lineage
    Microscopy, Confocal
    Single-Cell Analysis
    Access Rights
    Free to All
  • Saiz et al. (2016) Code Repository

    Authors
    Arenales, Nestor Saiz
    Description

    Description from GitHub: "This repository contains the data extracted from all embryo images in the study, the R scripts used to clean, transform and analyze the data and the code to generate all plots in the article. All original microscopy images and raw image segmentation files can be found in Figshare"

    Subject
    Electronic Data Processing
    Microscopy, Confocal
    Software
    Access Rights
    Free to All
  • Raw data for Growth factor-mediated coupling between lineage size and cell fate choice underlies robustness of mammalian development

    Authors
    Arenales, Nestor Saiz
    Bitria, Laura Mora
    Rahman, Shahadat
    George, Hannah
    3 more author(s)...
    Description

    Description from Figshare: "This dataset contains the raw image stacks, segmentation and tables for the data used in the article Growth factor-mediated coupling between lineage size and cell fate choice underlies robustness of mammalian development, by Saiz et al., (2020). Elife. 2020;9:e56079. doi:10.7554/eLife.56079" Data collection includes 34 separate datasets linked on main collection page,...

    Subject
    Cell Lineage
    Chimera
    Embryo, Mammalian
    Microscopy, Confocal
    Access Rights
    Free to All