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Data from: Reflectance confocal microscopy features of BRAF V600E mutated thin melanomas detected by immunohistochemistry
- Authors
- Urvanegia, Ana ClaudiaTavoloni Braga, Juliana CasagrandeShitara, DanielleFregnani, Jose Humberto5 more author(s)...
- Description
From Dryad summary: "Abstract: The classification of melanoma into four histological subtypes has been questioned regarding its clinical validity in providing relevant information for treatment for metastatic tumors. Specific genetic alterations are associated with particular clinical and histopathological features, suggesting that these could be helpful in refining existing melanoma classification...
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Biomarkers, TumorMelanomaMelanoma/geneticsMicroscopy, ConfocalProto-Oncogene Proteins B-raf
- Access Rights
- Free to All
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Live visualization of ERK activity in the mouse blastocyst reveals lineage specific signaling dynamics
- Authors
- Simon, Claire S.
- Description
Description from Figshare: "Confocal time-lapse images of hemizygous HprtERK-KTR and homozygous R26NLS-mKate2 embryos during pre-implantation development."
- Subject
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MAP Kinase Signaling SystemMicroscopy, ConfocalTime-Lapse Imaging
- Access Rights
- Free to All
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Data and code for Simon et al (2020) Developmental Cell
- Authors
- Hadjantonakis, Anna-KaterinaSimon, Claire S.
- Description
Description from GitHub: "Included in this repository are: 1. CellProfiler pipelines for the segmentation and measurement of cytoplasmic and nuclear fluorescence intensities of ERK-KTR-mClover in confocal time-lapse images of hemizygousÊHprtERK-KTRÊand homozygousÊR26NLS-mKate2Êembryos during pre-implantation development. Pipeline A was used by default and Pipeline B and C were used for cells where...
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AlgorithmsCytoplasmMicroscopy, ConfocalSoftwareTime-Lapse Imaging
- Access Rights
- Free to All
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Asynchronous fate decisions at the single cell level collectively ensure a consistent lineage composition in the mouse blastocyst
- Authors
- Arenales, Nestor SaizWilliams, Kiah M.Seshan, VenkatramanHadjantonakis, Anna-Katerina
- Description
Description from Figshare: "This collection contains all raw confocal images (as .lsm Z-stacks) with their corresponding image segmentation files (as .tiff sequences), as well as the raw quantification spreadsheets (as .csv) and their corresponding corrected quantification files (as .csv) for the paper by Saiz et al (2016) Asynchronous fate decisions at the single cell level collectively ensure...
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AlgorithmsBlastocystCell LineageMicroscopy, ConfocalSingle-Cell Analysis
- Access Rights
- Free to All
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Saiz et al. (2016) Code Repository
- Authors
- Arenales, Nestor Saiz
- Description
Description from GitHub: "This repository contains the data extracted from all embryo images in the study, the R scripts used to clean, transform and analyze the data and the code to generate all plots in the article. All original microscopy images and raw image segmentation files can be found in Figshare"
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Electronic Data ProcessingMicroscopy, ConfocalSoftware
- Access Rights
- Free to All
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Raw data for Growth factor-mediated coupling between lineage size and cell fate choice underlies robustness of mammalian development
- Authors
- Arenales, Nestor SaizBitria, Laura MoraRahman, ShahadatGeorge, Hannah3 more author(s)...
- Description
Description from Figshare: "This dataset contains the raw image stacks, segmentation and tables for the data used in the article Growth factor-mediated coupling between lineage size and cell fate choice underlies robustness of mammalian development, by Saiz et al., (2020). Elife. 2020;9:e56079. doi:10.7554/eLife.56079" Data collection includes 34 separate datasets linked on main collection page,...
- Subject
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Cell LineageChimeraEmbryo, MammalianMicroscopy, Confocal
- Access Rights
- Free to All