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Testicular Germ Cell Tumors (TCGA, PanCancer Atlas)
- Description
This dataset contains summary data visualizations and clinical data from a broad sampling of 149 testicular germ cell tumors from 149 patients. The data was gathered as part of the PanCancer Atlas initiative, which aims to answer big, overarching questions about cancer by examining the full set of tumors characterized in the robust TCGA dataset. The clinical data includes mutation count, information...
- Subject
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Carcinoma, EmbryonalDNA Mutational AnalysisEndodermal Sinus TumorNeoplasms, Germ Cell and EmbryonalSeminomaTeratomaTesticular Neoplasms
- Access Rights
- Free to All
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Germ Cell Tumors and Shared Leukemias: Targeted and WES sequencing of germ cell tumor and shared leukemia samples
- Description
This dataset contains the summary data visualizations and clinical data of 21 samples from 11 patients of targeted and WES sequencing of germ cell tumor and shared leukemia samples. Clinical data includes: Cancer Type, Number of Samples per Patient, Mutation Count, Fraction Genome Altered, Specimen Preservation Type, Platform and Somatic Status. The plaintext components of the dataset can be downloaded...
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Histiocytic SarcomaKiller Cells, NaturalLeukemia, Myeloid, AcuteLeukemia, Myelomonocytic, ChronicLymphohistiocytosis, HemophagocyticLymphoma, T-CellMyelodysplastic SyndromesNeoplasms, Germ Cell and Embryonal
- Access Rights
- Free to All
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Germ Cell Tumors: Whole-exome and Targeted sequencing of 19 samples and Targeted sequencing of 161 samples from 180 Germ Cell Tumor patients.
- Description
This dataset contains the summary data visualizations and clinical data of targeted sequencing of 180 samples and whole-exome sequencing of 19 samples from 180 Germ Cell Tumor Patients. Clinical data includes: Cancer Type, Mutation Count, Fraction Genome Altered, Diagnosis Age, Metastasis/Primary Sample Type, AJCC Tumor stage code, Chemo First Line, Chemo Regimen Category, Chemo Resistance, Chemotherapy...
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Neoplasms, Germ Cell and EmbryonalSeminoma
- Access Rights
- Free to All
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Mixed cfDNA (MSKCC, 2020): IMPACT sequencing of 229 cell-free DNA (cfDNA) and associated tumor samples with matched normal
- Description
This dataset contains the summary data visualizations and clinical data of IMPACT sequencing of 229 cell-free DNA (cfDNA) and associated tumor samples with matched normal from 118 patients. Clinical data includes: Cancer Type, Number of Samples Per Patient, Mutation Count, Fraction Genome Altered, Sex, Primary/Metastasis Sample Type, Collaboration Id, Gene Panel, Oncotree Code, Tumor/cfDNA Sample...
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AdenocarcinomaAdenocarcinoma of LungBreast NeoplasmsCarcinoma, Ductal, BreastCarcinoma, NeuroendocrineCarcinoma, Renal CellCarcinoma, Squamous CellCell-Free Nucleic AcidsChoriocarcinomaEndodermal Sinus TumorMelanomaNeoplasms, Germ Cell and EmbryonalNeoplasms, Squamous CellNeuroendocrine TumorsProstatic NeoplasmsSeminomaSmall Cell Lung CarcinomaUrinary Bladder Neoplasms
- Access Rights
- Free to All
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Expression Profiling of Adult Male Germ Cell Tumors
- Authors
- Korkola, James E.Houldsworth, JaneChadalavada, Rajendrakumar S. V.Olshen, Adam B.4 more author(s)...
- Description
Summary from GEO: "Expression profiling of a panel of 101 adult male germ cell tumors and 5 normal testis specimens was performed on Affymetrix U133A and U133B microarrays. This data has been used to: 1) generate a gene classifier that predicts histology (see PMID 15870693). 2) identify candidate target genes on 12p, a region that is gained in almost 100% of germ cell tumors (see PMID 16424014) 3)...
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Gene Expression ProfilingGenomicsNeoplasms, Germ Cell and EmbryonalSeminomaTesticular Neoplasms
- Access Rights
- Free to All
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Genomic Profiling of Adult Male Germ Cell Tumors
- Authors
- Korkola, James E.Heck, SandyChaganti, Raju S. K.Houldsworth, Jane1 more author(s)...
- Description
Summary from GEO: "Genomic profiling of a panel of 74 adult male germ cell tumors of various histologies from primary and metastatic sites using high resolution BAC array CGH. See Pubmed ID # 17943972. Completed Study: Statistical analyses were performed to identify regions that were frequently altered in all tumors, as well as in specific histologic subsets and from different tumor sites (i.e.,...
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Gene Expression ProfilingGenomicsNeoplasms, Germ Cell and Embryonal
- Access Rights
- Free to All